Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01941 ATGATGTCTGGTAGGTGTGCAGCTTGCAAGAATCAAAGAAGAAGATGCCCTTCAGATTGCATCTTCGCTCCATATTTCCCTGCCAATGATCCTCAAAGATTTGCTTCTGTTCACAGAATCTATGGTGGCAGCAATGTTGGAAAGATGCTTCAGCAAATTCCACCGTATTTACGTGAACAAGCTGCAAATACTTTGTATTATGAAGCACAGTGTAGGATTCGAAACCCTGTTTATGGATGCGTTGGGGTCATTTCTAAATTGTCTCAAGAAATTAGCAATACAGAAATTGCACTTTCTCAAATAGAAACTCAGATTGATTGTCACAAGAATCAAGTCCAACAGGCAAAAGCTGAATCAAAGTTCAATGTCTTGTCAACAATTGAAGCTGAATCAAACTTTGATGTCTTGCAAGGACAAAGCAGCAGTGCCACGGAGTTTCACATGCCAAGTCAATTAAAATGGTTTAATAAAAACTCTGATTTCCAATAG 489 0.3885 MMSGRCAACKNQRRRCPSDCIFAPYFPANDPQRFASVHRIYGGSNVGKMLQQIPPYLREQAANTLYYEAQCRIRNPVYGCVGVISKLSQEISNTEIALSQIETQIDCHKNQVQQAKAESKFNVLSTIEAESNFDVLQGQSSSATEFHMPSQLKWFNKNSDFQ 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01941 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 118 - -
Cca05g01941 162 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
Cca05g01941 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 23-RELATED 1 118 - -
Cca05g01941 162 Pfam Lateral organ boundaries (LOB) domain 5 101 IPR004883 -
Cca05g01941 162 Coils Coil 84 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01941 Cca-Chr5 39204772 39205414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01941 1 116 AS2 family AT3G26660 51.724 5.24e-43 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca05g01941 LOB 4.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01941 - - ccaj:109810657 334.724