Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01936 ATGCCTTCTGCTCAAGATCCATTCTACGTTGTCAAGGAGGAGATTCAAGAATCTATTGATAAGTTGCAATCTGCTTTTCACCAATGGGAAAACACTGCTGAGGCTGGCGAGCGATCACGTCTTTCGAAAGAAGTTGTTGCTAGTTGTGAAAGCATTGAATGGCAGGTGGATGAATTGGACAAAGCAATTTCTGTAGCCTCTCGAGATCCTTCTTGGTATGGCATTGATGAAGTGGAGCTTGAAAGCCGGAGGAGGTGGACCAGTGATGCTCGCACCCAGGTGAGCACAACAAAGAAAGCAGCGGCAGCTGGGGGCTCAAATATAACAAACAATGCTACTCTAAATGGGATGCACAGGGAATTAATGAGGCTTCCTAATTCTTACCAAGCTGCATCTGACCAATATGCTGCCCGGGATAATGATGATTTTATAGAATCAGAATCAGATAGGCAGATGCTTCTTATGAAGAAACAAGATGAGGAGTTGGACGAGCTTAGTTTAAGTGTGCAAAGAATTGGAGGTGTTGGACTTACTATTCATGAAGAGCTCCTATCACAGGAAAAGATTATTGATGAACTGGGTAATGAGATGGAAAGTACATCTAATCGTCTAGATTTCGTCCAAAAAAAAGTGGCAATGGTCATGAAGAAAGCTAGCGCAAAGGGCCAGATCATGATGATATTGGGTTTGCTGGCGCTGTTCATTTTCCTCTTTATCTTGGTATTCTTCACCTAG 735 0.4313 MPSAQDPFYVVKEEIQESIDKLQSAFHQWENTAEAGERSRLSKEVVASCESIEWQVDELDKAISVASRDPSWYGIDEVELESRRRWTSDARTQVSTTKKAAAAGGSNITNNATLNGMHRELMRLPNSYQAASDQYAARDNDDFIESESDRQMLLMKKQDEELDELSLSVQRIGGVGLTIHEELLSQEKIIDELGNEMESTSNRLDFVQKKVAMVMKKASAKGQIMMILGLLALFIFLFILVFFT 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01936 244 SUPERFAMILY SNARE fusion complex 150 214 - -
Cca05g01936 244 Coils Coil 190 210 - -
Cca05g01936 244 Gene3D - 159 223 - -
Cca05g01936 244 Pfam SNARE domain 189 240 IPR000727 -
Cca05g01936 244 SMART tSNARE_6 147 214 IPR000727 -
Cca05g01936 244 SUPERFAMILY t-snare proteins 5 99 IPR010989 GO:0016020|GO:0016192
Cca05g01936 244 Coils Coil 12 32 - -
Cca05g01936 244 Gene3D - 2 103 - -
Cca05g01936 244 CDD SNARE_Qc 155 212 - -
Cca05g01936 244 PANTHER SYNTAXIN 1 243 IPR045242 -
Cca05g01936 244 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Cca05g01936 244 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 152 214 IPR000727 -
Cca05g01936 244 PANTHER SYNTAXIN PROTEIN 1 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01936 Cca-Chr5 39157016 39160711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01936 55 244 SNARE and Associated Proteins AT1G28490 67.539 1.34e-89 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01936 K08500 - gmx:100793612 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01094 09 31953782 31963290 Cca05g01936 05 39157016 39160711 PCT