Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01935 ATGGTTGAAGTGGGTATTCAGATCCCTGCAAGAACTTTCGACCCTTTTGCTGAGGCTAAAGAATCTGATGGCCCTGGGGCAAAAGAGTATGTGCATATCCGCATACAACAGAGAAATGGAAAGAAGAGTCTAACCACAGTGCAGGGGCTGAGGAAGGAGTTCAGCTACGAAAAGATTCTCAAAGATCTCAAGAAAGAGTTCTGCTGCAATGGAAATGTTGTGCATGACAAGGAGCTTGGCAAGATTATCCAACTCCAAGGTGATCAACGCAAAAACGTTTCTCACTTCCTCATTCAAGCTGGCCTCGTTAGGAAGGACCAGATCAAGATCCATGGTTTCTGA 342 0.4532 MVEVGIQIPARTFDPFAEAKESDGPGAKEYVHIRIQQRNGKKSLTTVQGLRKEFSYEKILKDLKKEFCCNGNVVHDKELGKIIQLQGDQRKNVSHFLIQAGLVRKDQIKIHGF 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01935 113 PIRSF Transl_init_SUI1_Euk 1 113 IPR005874 GO:0003743
Cca05g01935 113 PANTHER PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG 1 113 - -
Cca05g01935 113 SUPERFAMILY eIF1-like 11 113 IPR036877 GO:0003743|GO:0006413
Cca05g01935 113 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 11 113 IPR005874 GO:0003743
Cca05g01935 113 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 101 IPR001950 GO:0003743|GO:0006413
Cca05g01935 113 Pfam Translation initiation factor SUI1 28 101 IPR001950 GO:0003743|GO:0006413
Cca05g01935 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - -
Cca05g01935 113 CDD eIF1_SUI1 29 112 IPR005874 GO:0003743
Cca05g01935 113 Gene3D - 3 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01935 Cca-Chr5 39155295 39156273 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01935 1 113 Eukaryotic Initiation Factors Gene Family AT5G54940 80.531 1.84e-65 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01935 K03113 - gmx:100499676 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01935 05 39155295 39156273 Cca05g01935 05 39155295 39156273 ECH