Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01934 ATGATAATGATGGAAAATTCAAAGTTTGATTATCTATTGGATGCAGTGTGCATGTTTAGTCGTTACGAGGAGGATTGCTTGAGAAACAAGAAACGTGAGAAAAGCGAAAGCCAACCTCGTGAGTTGCCAAGGATGTTCAAAGAGAAGATAAAGGAACTGAATGGGTGTGAGGAGAAGTTTGTGATGCAGAAGGAACTTTTTAAGTCAGACATTAGTCTAAACAATGCCCGGTTTTCTATTCCACCGAAAAAGTTGGTCGACAAGTTTCTGACCGAAACAGAAGAGTCTTTCTTGGATGTGCGTGAAGAGGAAAACAAGACGGTTCCCAGCATTCCTGTGTTGGTGTTGGATCCTTCATTGAGAGAGTACAACTTGCTCTTCAAGAAGTGGGATATGATGAGAAGTAGTGTCTATAACTTGGCCACCGGATGGAACCAGATTCTTCATCACAATAATTTCAAGGTCGATGATACGATGCAGCTATGGTCCTTTAGAGTCTCTTCTCAGCTTTGTTTTGCACTTGTCAAGCTCTGA 534 0.4157 MIMMENSKFDYLLDAVCMFSRYEEDCLRNKKREKSESQPRELPRMFKEKIKELNGCEEKFVMQKELFKSDISLNNARFSIPPKKLVDKFLTETEESFLDVREEENKTVPSIPVLVLDPSLREYNLLFKKWDMMRSSVYNLATGWNQILHHNNFKVDDTMQLWSFRVSSQLCFALVKL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01934 177 PANTHER DUF313 DOMAIN PROTEIN 29 176 - -
Cca05g01934 177 SUPERFAMILY DNA-binding pseudobarrel domain 60 175 IPR015300 -
Cca05g01934 177 Gene3D - 43 177 IPR015300 -
Cca05g01934 177 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 29 176 IPR005508 GO:0003677
Cca05g01934 177 Pfam B3 domain-containing protein At2g31720-like 43 149 IPR005508 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01934 Cca-Chr5 39153429 39154151 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01934 40 174 B3 DNA Binding Superfamily AT1G05930 26.277 1.44e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01934 - - ccaj:109810649 360.918