Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01933 ATGGGATCCTGTCTGAGTAAAAGAGGGTCAGAGCCAGAAGAACAACACATTGGTTATAGACATGCTGTTGGGGGTGGTGGTGTGCACAATCACAAGAGCCATGATCATGATCCCTATGTCAACCAATCAAAGCCCCCCTACCAATTACCTGAGAAACATGCACCTCATGTCCCACCAAGAAGCCCAAAACATGCACATCACACAATCACTGGGAAGCCCTTTGAGGATGTTAAGCAGCACTACACACTTGGGAAGGAGTTGGGGAGAGGCCAATTTGGGGTGACCTATCTCTGCACTCACAACTCAACTGGCTTGCAATATGCCTGCAAGTCCATTTCAAAGAGGAAGCTTGTGAGCAGAGCTGACAAAGAGGACATGAGGAGGGAGATCCAAATCATGCAGCACTTGAGTGGACAATCCAACATTGTGGAGTTCAAAGGTGCTTATGAGGATAAGCACTCAGTTCATGTGGTCATGGAGCTGTGTGCAGGTGGTGAACTTTTTGACAGGATTATTGCCAAGGGCCACTACAGTGAAAGGGCTGCTGCTTCCATATGTAGACAGATTGTTAAGGTTGTTCACATCTGCCATTTTATGGGTGTCATGCATAGGGATCTCAAGCCAGAGAATTTCTTGCTGTCCAGTAAGGATGACAAGGCGCTTCTCAAGGCCACAGATTTTGGCTTGTCTGTCTTCATTGAAGAAGGAAAGGTGTATCGAGATATAGTTGGCAGTGCTTACTATGTTGCTCCAGAAGTTCTACGTCGTAGCTATGGGAAGGAAATAGATATATGGAGTGCAGGAGTCATATTGTATATCCTACTTAGTGGTGTCCCTCCATTTTGGGCAGAGACGGAAAACGGAATATTTGATGCCATATTGCAAGGTCATATTGATTTTGAAAGTCATCCATGGCCTAGCATTTCAAAAAGTGCTAAGGACCTTGTTCGCAAGATGCTTATAAAGGATCCAAAGAAACGTGTTACTCCTGCTGAGGTTTTAGAGCATCCATGGCTTAAAGAAGGCGGAAATGCTTCTGACAAGCCAATAGACAGTGCAGTGCTTTCCAGAATGAAGCAATTCAGAGCGATGAATAAACTAAAAAAACTAGCCCTCAAGGTCATTGCTGAAAATCTTTCTGAAGAAGAGATCCAGGGTTTGAAGGCAATGTTCACAAATATGGACACTGACAATAGTGGTACAATCACCTATGAGGAACTGAGGGCAGGGTTGCAAAGACTTGGCTCAAGGCTTACCGAAGCTGAAGTGCGGCAGCTTATGGATGCCGCTGATGTCGATGGAAATGGCACAATTGACTACATAGAATTCATCACTGCTACAATGCATAGACACAAGTTAGAAAGAGATGAGCATCTTTACAAGGCCTTCCAATATTTTGATAAAGATAGCAGCGGGTACATCACAAGAGATGAGCTGGAAACAGCCATGAAGGATTATGGTATGGGTGACGAGGCCACAATCAGGGAAATTATATCTGAAGTTGATACAGATAATGATGGTAGAATCAACTATGAAGAGTTTTGTACAATGATGAGGAGTGGAACCCAACAACAAGGCAAACTATTCTAA 1590 0.4409 MGSCLSKRGSEPEEQHIGYRHAVGGGGVHNHKSHDHDPYVNQSKPPYQLPEKHAPHVPPRSPKHAHHTITGKPFEDVKQHYTLGKELGRGQFGVTYLCTHNSTGLQYACKSISKRKLVSRADKEDMRREIQIMQHLSGQSNIVEFKGAYEDKHSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVKVVHICHFMGVMHRDLKPENFLLSSKDDKALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRSYGKEIDIWSAGVILYILLSGVPPFWAETENGIFDAILQGHIDFESHPWPSISKSAKDLVRKMLIKDPKKRVTPAEVLEHPWLKEGGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIQGLKAMFTNMDTDNSGTITYEELRAGLQRLGSRLTEAEVRQLMDAADVDGNGTIDYIEFITATMHRHKLERDEHLYKAFQYFDKDSSGYITRDELETAMKDYGMGDEATIREIISEVDTDNDGRINYEEFCTMMRSGTQQQGKLF 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01933 529 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Cca05g01933 529 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524
Cca05g01933 529 Gene3D - 347 524 - -
Cca05g01933 529 CDD EFh_PI-PLC 387 520 - -
Cca05g01933 529 ProSiteProfiles EF-hand calcium-binding domain profile. 490 524 IPR002048 GO:0005509
Cca05g01933 529 SMART serkin_6 81 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01933 529 ProSitePatterns EF-hand calcium-binding domain. 502 514 IPR018247 -
Cca05g01933 529 Pfam Protein kinase domain 81 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01933 529 ProSiteProfiles EF-hand calcium-binding domain profile. 454 489 IPR002048 GO:0005509
Cca05g01933 529 ProSiteProfiles EF-hand calcium-binding domain profile. 382 417 IPR002048 GO:0005509
Cca05g01933 529 CDD STKc_CAMK 80 338 - -
Cca05g01933 529 CDD EFh 461 519 IPR002048 GO:0005509
Cca05g01933 529 Pfam EF-hand domain pair 457 519 IPR002048 GO:0005509
Cca05g01933 529 Pfam EF-hand domain pair 387 447 IPR002048 GO:0005509
Cca05g01933 529 Gene3D Transferase(Phosphotransferase) domain 1 167 346 - -
Cca05g01933 529 ProSitePatterns EF-hand calcium-binding domain. 395 407 IPR018247 -
Cca05g01933 529 PANTHER SERINE/THREONINE-PROTEIN KINASE 40 523 - -
Cca05g01933 529 Coils Coil 404 424 - -
Cca05g01933 529 SMART efh_1 493 521 IPR002048 GO:0005509
Cca05g01933 529 SMART efh_1 422 450 IPR002048 GO:0005509
Cca05g01933 529 SMART efh_1 458 486 IPR002048 GO:0005509
Cca05g01933 529 SMART efh_1 386 414 IPR002048 GO:0005509
Cca05g01933 529 ProSiteProfiles EF-hand calcium-binding domain profile. 418 453 IPR002048 GO:0005509
Cca05g01933 529 SUPERFAMILY Protein kinase-like (PK-like) 58 360 IPR011009 -
Cca05g01933 529 Gene3D Phosphorylase Kinase; domain 1 83 166 - -
Cca05g01933 529 ProSitePatterns EF-hand calcium-binding domain. 467 479 IPR018247 -
Cca05g01933 529 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 40 523 - -
Cca05g01933 529 ProSiteProfiles Protein kinase domain profile. 81 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01933 529 MobiDBLite consensus disorder prediction 21 68 - -
Cca05g01933 529 SUPERFAMILY EF-hand 378 518 IPR011992 -
Cca05g01933 529 ProSitePatterns EF-hand calcium-binding domain. 431 443 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01933 Cca-Chr5 39142934 39147801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01933 1 529 EF-hand Containing Proteins AT3G20410 74.307 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca05g01933 Pkinase 5.1e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01933 K13412 - gmx:100794852 956.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01933 05 39142934 39147801 Cca09g01090 09 31924304 31930024 ECH
Cca05g01933 05 39142934 39147801 Cca05g01933 05 39142934 39147801 ECH