Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01932 ATGGTTGAAGCCATGGAACGTGAAGAAACGCCCAAATTCAGAGACATTAGACGGTATATCTGCGAGTTCTGCGGTATCTGCAGGTCCAAGAAAGCCCTCATCACCTCTCACATCAATTCGCACCACAAGGAGGAAGCCGAAAAAGCAGAAGCTGAAAAGGATCCCCAATCAGATCCTGTTAAATCCAACACGTGCGAGGAATGTGGTGCCACTTTCAAGAAACACGCCTATTTGTTGCAGCACATGCAAAGTCACTCGCTTGAGCGGCCCTTTGCGTGTACTGTTGATGATTGTCAGGCAAATTACAGAAGGAAAGACCACCTGACTCGGCACCTTCTACAGCATCAAGGGAAGACTTTTAAGTGCCCTGTTGAGAATTGCAACATTGAGTTCTCTTTGCATGGCAATATGAAAAGGCATGTTGAGGAGATTCATGATGATAGTTCTACCTCTATTTGGGACAAAAGTCCTAAACAGTTTGTGTGTTCAGAGATTGGTTGTGGAAAGGTTTTCAGATATGCATCACGGCTACAAAAGCATGAAGGTTCTCATGTTAAGCTGGAGTCAGTAGATGTGATGTGCTTAGAACCTGGTTGCATGAAACATTTCACTAATGTTCAGTGCCTTCAAGCCCATGTTAAATCCTCCCATCAATATAAAACCTGTGACATTTGTGGGACTAAGCAACTGAAGAAAAATATTAAACGGCACCTTCGTTCACATGAAGCCAGCAGTTCATCGGAGACCTTTCAATGCGAGTTTAAGGGTTGTTGCTGCACATTCTCCACAAAATCTAATCTTGATAAGCATAAGAAGGTTGTGCATTTTAAGGAAAAGCCTTTTGTGTGTGGGTTTCCTGATTGTGGCATGAGATTTGCTTACAAACATGTGCGAGATAATCACGAAAAAACTGCCAAGCATGTTTTTACTCTTGGGGATTTTGAAGAAGGTGATGAAGAGTTCAGATCAAGGCCGAGGGGAGGGAGGAAGAGAGAATGTCCTACGGTTGAAATGCTAATTAGGAAGAGGGTTACCCCGCCTAGTCATTAA 1050 0.4343 MVEAMEREETPKFRDIRRYICEFCGICRSKKALITSHINSHHKEEAEKAEAEKDPQSDPVKSNTCEECGATFKKHAYLLQHMQSHSLERPFACTVDDCQANYRRKDHLTRHLLQHQGKTFKCPVENCNIEFSLHGNMKRHVEEIHDDSSTSIWDKSPKQFVCSEIGCGKVFRYASRLQKHEGSHVKLESVDVMCLEPGCMKHFTNVQCLQAHVKSSHQYKTCDICGTKQLKKNIKRHLRSHEASSSSETFQCEFKGCCCTFSTKSNLDKHKKVVHFKEKPFVCGFPDCGMRFAYKHVRDNHEKTAKHVFTLGDFEEGDEEFRSRPRGGRKRECPTVEMLIRKRVTPPSH 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01932 349 PANTHER ZINC FINGER PROTEIN 9 347 - -
Cca05g01932 349 Gene3D Classic Zinc Finger 116 155 - -
Cca05g01932 349 PANTHER - 9 347 - -
Cca05g01932 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 189 IPR013087 -
Cca05g01932 349 ProSitePatterns Zinc finger C2H2 type domain signature. 283 307 IPR013087 -
Cca05g01932 349 Gene3D Classic Zinc Finger 251 278 - -
Cca05g01932 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 250 280 IPR013087 -
Cca05g01932 349 Gene3D Classic Zinc Finger 92 115 - -
Cca05g01932 349 Pfam Zinc finger, C2H2 type 160 184 IPR013087 -
Cca05g01932 349 Pfam Zinc finger, C2H2 type 64 85 IPR013087 -
Cca05g01932 349 ProSitePatterns Zinc finger C2H2 type domain signature. 194 217 IPR013087 -
Cca05g01932 349 Gene3D Classic Zinc Finger 279 304 - -
Cca05g01932 349 ProSitePatterns Zinc finger C2H2 type domain signature. 122 145 IPR013087 -
Cca05g01932 349 SUPERFAMILY beta-beta-alpha zinc fingers 232 289 IPR036236 -
Cca05g01932 349 SMART c2h2final6 220 241 IPR013087 -
Cca05g01932 349 SMART c2h2final6 281 307 IPR013087 -
Cca05g01932 349 SMART c2h2final6 250 275 IPR013087 -
Cca05g01932 349 SMART c2h2final6 160 184 IPR013087 -
Cca05g01932 349 SMART c2h2final6 120 145 IPR013087 -
Cca05g01932 349 SMART c2h2final6 192 217 IPR013087 -
Cca05g01932 349 SMART c2h2final6 91 115 IPR013087 -
Cca05g01932 349 SMART c2h2final6 19 41 IPR013087 -
Cca05g01932 349 SMART c2h2final6 63 85 IPR013087 -
Cca05g01932 349 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Cca05g01932 349 ProSitePatterns Zinc finger C2H2 type domain signature. 162 184 IPR013087 -
Cca05g01932 349 ProSitePatterns Zinc finger C2H2 type domain signature. 252 275 IPR013087 -
Cca05g01932 349 SUPERFAMILY beta-beta-alpha zinc fingers 62 115 IPR036236 -
Cca05g01932 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 150 IPR013087 -
Cca05g01932 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Cca05g01932 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 46 IPR013087 -
Cca05g01932 349 ProSitePatterns Zinc finger C2H2 type domain signature. 93 115 IPR013087 -
Cca05g01932 349 Gene3D Classic Zinc Finger 156 221 - -
Cca05g01932 349 SUPERFAMILY beta-beta-alpha zinc fingers 118 146 IPR036236 -
Cca05g01932 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 120 IPR013087 -
Cca05g01932 349 Gene3D Classic Zinc Finger 4 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01932 Cca-Chr5 39133218 39135184 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01932 87 310 C2H2 Transcription Factor Family AT1G72050 50.000 3.05e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca05g01932 zf-C2H2 0.0053 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01932 K09191 - gmx:100801812 615.535