Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01931 ATGTCTATTACCAACACTTCTCTCACTATGACCAACTGGTTTTCTGGAATGACAAAAACAGTAACAAGGTGTAAGCAACTTTTCTCTCTGTTTGCCGTTATTGGCGGTTCTGTAGCTGAGCTATTCATGAAAGCTATGGATAGAGTTCTTTTTGCTGCATTCACTTGCATTCTGGCACTAGGAGGGTCAATAGTAGGATCAATTGCAGGAGGCATCAAAGGGCAGACCACAGAAGCTGGTTTTCTTGATGGAGCTGGCAAAGGAGCAATAACAGGAGCCATTGCATCCTTGGAATTGATCAATTTTGCTTCTCTTGATGAGCCATTGTCCAAGGTTGCCCTGTTGAGAAGTTTACTAAATGGGAAAGTCTTTATGGAATGGATATGTCCAGCTGTTGCACAACTCTACCAGTTGCATGCAACTATTAGCACGCTGGAAACAATTTTCGAAGAAGTATCAGATATTTATGATATCAGGGGACTCAGAGGGATACCCCAGAATGTAATTATGAAGCTTCCTTTTCAGCCATTCAACTCTAACAAAATGTTGAAATCATACAATACGTCTTGCTGCTCAATTTGCTACCAGGATTTTGAGGATGGAGAATTGGTGAGGATACTTCCAAAATGTAGCCACCATTTTCATTTAGAATGCATAGACAAGTGGCTTGTCCAACAAGGATCATGCCCAATGTGCAGAACTTATGTTCCAGACCACATTCGTAATTAA 729 0.4102 MSITNTSLTMTNWFSGMTKTVTRCKQLFSLFAVIGGSVAELFMKAMDRVLFAAFTCILALGGSIVGSIAGGIKGQTTEAGFLDGAGKGAITGAIASLELINFASLDEPLSKVALLRSLLNGKVFMEWICPAVAQLYQLHATISTLETIFEEVSDIYDIRGLRGIPQNVIMKLPFQPFNSNKMLKSYNTSCCSICYQDFEDGELVRILPKCSHHFHLECIDKWLVQQGSCPMCRTYVPDHIRN 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01931 242 SMART ring_2 191 232 IPR001841 -
Cca05g01931 242 SUPERFAMILY RING/U-box 175 238 - -
Cca05g01931 242 CDD RING-H2_PA-TM-RING 190 233 - -
Cca05g01931 242 Pfam Ring finger domain 191 233 IPR001841 -
Cca05g01931 242 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 17 236 IPR044523 -
Cca05g01931 242 ProSiteProfiles Zinc finger RING-type profile. 191 233 IPR001841 -
Cca05g01931 242 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 17 236 - -
Cca05g01931 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 239 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01931 Cca-Chr5 39120830 39122987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01931 50 236 C3H Transcription Factor Family AT5G66070 37.563 1.62e-37 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01931 - K19041 gmx:100305612 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01931 05 39120830 39122987 Cca05g01931 05 39120830 39122987 ECH