Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01929 ATGGAAGGTGTTATTCTGAGAAGAGTTATTCCGTCGGATAACAGTTGCCTCTTCAATGCGGTTGGATATGTTATGGATCATGACAAACACAAAGCGGCTGAGTTGAGACAGGTTATAGCCGCAACAGTAGCAAGTGATCCAGAGAAATACAGTGAAGCGTTTCTTGGGAAGCCAAATGCAGAGTATTGTAATTGGATTCTTGACTCGGAGAAGTGGGGAGGTGCAATTGAACTTTCGATATTAGCAGATTATTATGGACGTGAAATTGCAGCATATGATATCCAGACAACCCGATGTGATTTGTATGGTCAGGGAAGTAACTATTCTGAAAGAGTAATATTGATTTACGATGGTCTCCACTATGATGCATTAGTGATGTCTCCCTTTGAGGAAGCTCCTGAGGAGTTCGATCAGACCATATTTGCTGTACAGAAAAACAGAAGCATTGGACCTATTGAGGGGCTTGCTCTAAATTTTGTGAAGGACCAGCAGAGGAAACGGAGTTACACCGACACTTCCAACTTCACTCTGCGCTGTGGGGTGTGCCAAATTGGAGTAGTTGGTCAAAAGGAGGCGGTGGAGCATGCACAAGCTACTGGTCATGTTAACTTCCAAGAGTATAGATGA 627 0.4354 MEGVILRRVIPSDNSCLFNAVGYVMDHDKHKAAELRQVIAATVASDPEKYSEAFLGKPNAEYCNWILDSEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQGSNYSERVILIYDGLHYDALVMSPFEEAPEEFDQTIFAVQKNRSIGPIEGLALNFVKDQQRKRSYTDTSNFTLRCGVCQIGVVGQKEAVEHAQATGHVNFQEYR 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01929 208 PANTHER UBIQUITIN THIOESTERASE OTU1 6 206 - -
Cca05g01929 208 Pfam OTU-like cysteine protease 12 98 IPR003323 -
Cca05g01929 208 ProSiteProfiles OTU domain profile. 5 127 IPR003323 -
Cca05g01929 208 SUPERFAMILY Cysteine proteinases 8 125 IPR038765 -
Cca05g01929 208 Gene3D - 1 173 - -
Cca05g01929 208 PANTHER HIV-INDUCED PROTEIN-7-LIKE PROTEASE 6 206 IPR039138 GO:0004843|GO:0016579|GO:0030433|GO:0101005
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01929 Cca-Chr5 39105802 39110120 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01929 1 208 C2H2 Transcription Factor Family AT1G50670 82.692 1.84e-131 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01929 K13719 - gmx:100793701 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01929 05 39105802 39110120 Cca05g01929 05 39105802 39110120 ECH