LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca05g01923	ATGAGTGGAGTGGGAATTGATATTGGGAATGAGAACTGTGTGATTGCTGCAGCGAAACAACGTGGGGTTGATGTTTTGTTGAATGATGAATCCAAACGTGAAAACCCTGCTGTGGTTTGCTTTGGAGAAAAGCAAAGGTTTTTAGGGTCAGCTGGTGCTGCTTCTGCCATGATGCAACCCAAGTCCACCATATCTCAAGTGAAGAGACTAATAGGCCGGAGCTTTTCGGACCCTGATGTTCAGAATGACTTAAGAATGCTCTCTGTTGATACTTCAGAAGGCCCAGATGGTGGCATTTTGATTCACTTGAAATACTTGAACGAGACTCATGCATTTACCCCGGTCCAAATAGTGGCAATGCTCTTTGCTCACTTGAAGACTATAGCCAAAAAAGATATGAGGACCTCTGTTTCTGACTGCGTTATTGGGGTTCCATCGTACTTTACCAACTTGCAAAGACAAGCTTATCTTGACGCAGCGACAATTGCTGGGTTGAAGCCTTTGGGGTTGATCCATGATTGCACTGCAACTGCTCTTAGTTATGGAGTTTACAAAACAGATTTTCCCAGTGCAGCTCCTATTTATGTTGCATTTGTTGACATAGGTCATTGTGATACTCAGGTCTCTGTTGCAGCGTTTCAGGCTGGTCAAATGAAGATACTTTCGCATGCTTTTGACAGGAGCTTAGGGGGGAGAGACTTCGATGAGGTTCTGTTTAGTCATTTTGCTGCACAATTTAAGGAACAGTACAGCATTGACGTGCATTCTAATGCCAGGGCACAGAGGAGGCTGCGTGTAGCATGTGAGAAGTTGAAGAAGGTTTTAAGCGCAAATGCAGAGGCTGCTCTGAACATTGAGTGTTTGATGGATGAAAAAGATGTGAAGGGCTTTATGAAGAGGGAAGAATTTGAGAATCTGGCATCAGGGTTATTGGAGAGAATTTGTATTCCTTGCAACAAAGCGGTGTCTGATGCAGGCTTGACAATAGAAAAGATTAATTCTGTTGAGTTAGTTGGTTCAGGATCACGGATTCCAGCTATAACTAGGTTATTAACTTCTCTATTTAAGAGAGAACTTAGACGCACACTGAATGCAAGTGAGTGTGTAGCTCGTGGTTGTGCTCTCCAGTGTGCCATGCTCAGTCCTGTTTTCCTTGTCAAGGAATATGAGGTCCAGGATTCTATTCCTTTTTCCATTGGACTTTCATCTGATGGAGGTCCAATTTTTGCAGGATCAGATGGTGTACTCTTCCCAAAAGGCCAACCCATTCCAAGTGTTAAAATTCTAACACTTCAGTGCAGTAATTTGCTGCGCCTGGAAGCATTCTATGCTAATCCAGATGAATTACCACCAGGGACATCTCCTAAAATCAGTTGCTTCACAATTGGTCCTTTCCATGGATCCCAAGAAAGTAAGGCAAGAATTAAAGTTCAACTAAATTTGCATGGCATTATCAGTATTGAATCATCTACTTTAGTTGACGATCATGTGGATGATTCAGTTACAACAGGTGTTTATCATTCAAACTCTGAAGCAATGAATGTTGAACCTGTTTCTGAGACAATTGAAAATGTCACTGAAGATAATATCAATAATAAGTGTGAATCTCCAAATCATTCTGCTGATGGTACAAGAAAAGATAAAGCTAACGGAAGGCTTCATGTACCAGTGACTGAGAACATCTATGGTGGAATGACCAAGCCTGAGATCTTGGAAGCCCAAGAAAAAGAACTCCAGTTGGCCCATCAGGACACAACAATGGAGCTAACCAAAGACACAAGGAATTCATTGGAGTCTTATATTTATGAAACGAGGAATAAGGTATACACGTTCAATTGA	1839	0.4187	MSGVGIDIGNENCVIAAAKQRGVDVLLNDESKRENPAVVCFGEKQRFLGSAGAASAMMQPKSTISQVKRLIGRSFSDPDVQNDLRMLSVDTSEGPDGGILIHLKYLNETHAFTPVQIVAMLFAHLKTIAKKDMRTSVSDCVIGVPSYFTNLQRQAYLDAATIAGLKPLGLIHDCTATALSYGVYKTDFPSAAPIYVAFVDIGHCDTQVSVAAFQAGQMKILSHAFDRSLGGRDFDEVLFSHFAAQFKEQYSIDVHSNARAQRRLRVACEKLKKVLSANAEAALNIECLMDEKDVKGFMKREEFENLASGLLERICIPCNKAVSDAGLTIEKINSVELVGSGSRIPAITRLLTSLFKRELRRTLNASECVARGCALQCAMLSPVFLVKEYEVQDSIPFSIGLSSDGGPIFAGSDGVLFPKGQPIPSVKILTLQCSNLLRLEAFYANPDELPPGTSPKISCFTIGPFHGSQESKARIKVQLNLHGIISIESSTLVDDHVDDSVTTGVYHSNSEAMNVEPVSETIENVTEDNINNKCESPNHSADGTRKDKANGRLHVPVTENIYGGMTKPEILEAQEKELQLAHQDTTMELTKDTRNSLESYIYETRNKVYTFN	612

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca05g01923	612	Gene3D	Substrate Binding Domain Of DNAk; Chain A, domain 1	387	551	IPR029047	-
	Cca05g01923	612	Pfam	Hsp70 protein	4	608	IPR013126	GO:0005524\|GO:0140662
	Cca05g01923	612	CDD	HSPA4_like_NDB	2	381	-	-
	Cca05g01923	612	Gene3D	Actin; Chain A, domain 4	230	313	-	-
	Cca05g01923	612	PANTHER	HSC70CB, ISOFORM G-RELATED	1	609	-	-
	Cca05g01923	612	Gene3D	-	5	374	-	-
	Cca05g01923	612	Gene3D	-	186	360	-	-
	Cca05g01923	612	PRINTS	70kDa heat shock protein signature	2	15	-	-
	Cca05g01923	612	PRINTS	70kDa heat shock protein signature	332	348	-	-
	Cca05g01923	612	PRINTS	70kDa heat shock protein signature	30	42	-	-
	Cca05g01923	612	PRINTS	70kDa heat shock protein signature	388	407	-	-
	Cca05g01923	612	PRINTS	70kDa heat shock protein signature	363	383	-	-
	Cca05g01923	612	PRINTS	70kDa heat shock protein signature	140	160	-	-
	Cca05g01923	612	Gene3D	-	565	610	IPR029048	-
	Cca05g01923	612	Gene3D	-	38	113	-	-
	Cca05g01923	612	SUPERFAMILY	Actin-like ATPase domain	3	185	IPR043129	-
	Cca05g01923	612	PANTHER	HEAT SHOCK 70 KDA PROTEIN	1	609	-	-
	Cca05g01923	612	SUPERFAMILY	Heat shock protein 70kD (HSP70), peptide-binding domain	386	598	IPR029047	-
	Cca05g01923	612	SUPERFAMILY	Actin-like ATPase domain	193	381	IPR043129	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca05g01923	Cca-Chr5	39061134	39065858	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca05g01923	4	427	Calmodulin-binding Proteins	AT1G16030	34.426	2.31e-78	259

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca05g01923	05	39061134	39065858	Cca05g01923	05	39061134	39065858	ECH