Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01913 ATGATTGGTGAAGGAGGCTTTGGGAGGGTATACAAAGGACGCCTTAAAAGCTTAAATAGGGTTGTTGCTGTGAAGCAACTTAACAGGAATGGATTCCAAGGAAACAGGGAATTCCTTGTAGAGGTTTTGATTTTGAGTCTCTTGCATCACCCTAACCTTGTCAATTTGGTAGGGTATTGTGCAGATGGTGATCAAAGGATTTTGGTATATGAGTTCATGGCGAATGGTTCTTTAGAAGATCACCTTCTTGAACTACCTCCGGACAGAAAGCCtttggattggcgtactagaatgaacattgcagcaggtgcagctaaaggacttgaatacttgcatgaagttgcgaatccgccagtgatataccgggatttcaaagcctcaaacatactactggatgaaaacttcaatccaaaactctctgattttggtcttgcaaagcttggtccaactggtgacaaaactcatgtatccaccagggtgatgggaacttatggctactgtgcacctgagtatgcctcaacaggtcaattgacaacaaaatcagatatatacagctttggagtagtgtttctcgagttgatcacaggaagaagAGCAATTGATCAGTCTAGACCATCTGATGAGCAAAACTTAGTCACTTGGGCACAACCACTATTAAGAGACAGAAGGAAAGTTGCAATAATGGTTGATCCATTGCTGAAAGGGAACTATCCAACAAAGGGTCTGCACCAAGCACTAGCAGTTGCAGCAATGTGCATTCAGGATGAAGCTGATATCCGACCTTTAATTAGTGACGTAGTTACAGCTCTTGAAGTTTTAGCCATGAAGCATATACAAGTTGGAAAACCACAACATCGTACAAAAGAGAGTTTTTATGAGAACGGAGAATGCAGTTGA 897 0.2664 MIGEGGFGRVYKGRLKSLNRVVAVKQLNRNGFQGNREFLVEVLILSLLHHPNLVNLVGYCADGDQRILVYEFMANGSLEDHLLELPPDRKPLDWRTRMNIAAGAAKGLEYLHEVANPPVIYRDFKASNILLDENFNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYASTGQLTTKSDIYSFGVVFLELITGRRAIDQSRPSDEQNLVTWAQPLLRDRRKVAIMVDPLLKGNYPTKGLHQALAVAAMCIQDEADIRPLISDVVTALEVLAMKHIQVGKPQHRTKESFYENGECS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01913 298 ProSitePatterns Protein kinases ATP-binding region signature. 2 25 IPR017441 GO:0005524
Cca05g01913 298 ProSiteProfiles Protein kinase domain profile. 1 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01913 298 Gene3D Phosphorylase Kinase; domain 1 2 73 - -
Cca05g01913 298 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Cca05g01913 298 Gene3D Transferase(Phosphotransferase) domain 1 74 294 - -
Cca05g01913 298 PANTHER RECEPTOR SERINE/THREONINE KINASE 1 298 - -
Cca05g01913 298 SUPERFAMILY Protein kinase-like (PK-like) 1 278 IPR011009 -
Cca05g01913 298 PANTHER OS07G0668900 PROTEIN 1 298 - -
Cca05g01913 298 Pfam Protein kinase domain 2 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01913 298 CDD STKc_IRAK 2 271 - -
Cca05g01913 298 PIRSF ILK 2 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01913 Cca-Chr5 38963402 38967289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01913 1 274 Glycoside Hydrolase AT3G07070 72.628 1.41e-150 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Cca05g01913 Pkinase 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01913 - - gmx:100798032 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01913 05 38963402 38967289 Cca09g01054 09 31136621 31148075 ECH
Cca05g01913 05 38963402 38967289 Cca05g01913 05 38963402 38967289 ECH
Cca09g01054 09 31136621 31148075 Cca05g01913 05 38963402 38967289 PCT