Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01906 ATGTCGATGTCCAAGAGTTCGAAGATGCTGCAGTACATCAACTACCGCATGCGCGTCACCATCCAGGACGGCCGCCAGCTCGTCGGAAAATTCATGGCCTTCGACCGCCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGCAAGCTTCCTCCGGCCAAGGGCAAGAAGCCCGCCGACGCCGACCGCGAGGACCGACGCACCCTCGGCCTCGTCCTCCTCCGCGGCGAGGAGGTCATCTCCATGACCGTCGAGGGCCCCCCTCCGCCCGAGGAGTCCCGCTCCAAGGCCGTCAGCGCCGCCGCCCTTGCCGGCCCCGGCATCGGCCGCGCCGCCGGCAGAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCTTCCCGAAATGATGCAGTCTCAGATCTCGTGCCTGCCGCAGCTCAACGCGCCGCCGGTGTCTTACCCCGGCGCTCCGCCGCCGGTGATGCGCCCGCCGGGCCAGATGCCGGGGTACCCCGGCCAGGGCCCGCCTCCCATGGCGAGGGGACCTCCTCCGCCGATGCCGCCCGGGCAATACGCTCCCAGGCCCGGCGGTGCTCCGCCGCAGCCTTACCCTGTTCCGCCACAGTTTGGACAGCGTCCCATGGGGCCTCCTCCTCCTGGTCAGATGGTAAGGGGTCCTccggcgccgcctcgtcccgggatgcccgctccgccaccgcctcgccccgGCATGCCACCACCACCTGGAGGTGGTGTTCCGGTGTATGGTCCTCCTCGACCTGGCATGCCCCCTCCGCCAAACCCTCCGAATCAACAGCAACAGTAATGGGAGAAGGGATTGATAGGTTTCTTTTTGCTGAGGCCTCCGTTCCGATCAAATACATCACTGCTGCTCACGCCGCCACCGCCAGATTCGTGATGGGGAAAAATGAGTTTCTCACACCTAAAGCAATTGCCAATAGAATCAAAGCAAAAGGATTGCAGAAGCTTCGGTGGTATTGCCAGATGTGCCAGAAGCAATGCCGAGATGAGAATGGGTTTAAATGTCATTGCATGAGTGAAAGCCACCAGCGTCAAATGCAAATTTTTGGCCAAAACCCACACCGAATAGTTGAGGGCTATTCTGAAGAGTTTGAGACATCTTTTCTGGAGCACATGAAGCGCAGCCACCGATTCAGCCGTGTGGCAGCCACTGTAGTTTATAACGAATACATAAATGATAGACACCATGTTCATATGAACTCCACTCAGTGGGCTACGCTTACTGAGTTTGTTAAGTACTTGGGTCGAACCGGTAAATGTAAGGTTGAGGAGACACCCAAGGGATGGTTCATTACATACATAGATAGAGATTCTGAAACCCTTTTCAAGGAGAGGATGAAGAATAAGAGAATAAAGGCAGATATGGCGGATGAAGAAAAGCAAGAGAAGGAGATCAGGAAACAGATTGAAATGGCTGAGCAAATGATGCAGCTGCCTAATCCTGAGATTGATCAGCCTTCACAAGTTGAGCCTCCAAGGGAACTAATTATGGAAGATGGAATTAAGATAGGATTTTCTCTTGGGTCATCATCAGCTAGACCAGTGGTCAAGGAAAAACGTGAGGCTTCAAGGGTGGTGTTTGATGAGGTTGATGAAGAGAAATATGAGGAAAGGAATCGTGGAAACAATTTGAAGAGGAAAGAAAGTGGCGGTGGAAAATCAACTCTGGATGAAATGATGAGGGATGAAGAGAAGAAAAAGGAAAAAATTAACCGGAAGGATTATTGGTTGCACGAGGGAATTGTTGTTAAGGTTATGAGCAAAGTTTTGGCAGAGAAGGGGTATTACAAACAAAAGGGTGTTGTTCGGAAGGTGATTGATAAGTATGTTGGGGAAATAGAAATGCTTGAAAGCAAGCATGTGCTCAGAGTTGATCAGGCTGAGCTTGAAACTGTGATTCCCCAAGTTGGGGGTAGGGTTAAAATAGTCAATGGTGCATATCGAGGATCAATTGCTAAGCTGTTGGGGGTGGATACAGATAAGTTTTGTGCCAAGGTGCAGATTGAGAAAGGTCCCTATGATGGTAGGGTACTTAAAGCCATGGAATATGAGGACATTTGTAAAGTGGCCTAG 2127 0.4988 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPADADREDRRTLGLVLLRGEEVISMTVEGPPPPEESRSKAVSAAALAGPGIGRAAGRGXXXXXXXXXXXXXXXXXXPPSRNDAVSDLVPAAAQRAAGVLPRRSAAGDAPAGPDAGVPRPGPASHGEGTSSADAARAIRSQARRCSAAALPCSATVWTASHGASSSWSDGKGSSGAASSRDARSATASPRHATTTWRWCSGVWSSSTWHAPSAKPSESTATVMGEGIDRFLFAEASVPIKYITAAHAATARFVMGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNPHRIVEGYSEEFETSFLEHMKRSHRFSRVAATVVYNEYINDRHHVHMNSTQWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKERMKNKRIKADMADEEKQEKEIRKQIEMAEQMMQLPNPEIDQPSQVEPPRELIMEDGIKIGFSLGSSSARPVVKEKREASRVVFDEVDEEKYEERNRGNNLKRKESGGGKSTLDEMMRDEEKKKEKINRKDYWLHEGIVVKVMSKVLAEKGYYKQKGVVRKVIDKYVGEIEMLESKHVLRVDQAELETVIPQVGGRVKIVNGAYRGSIAKLLGVDTDKFCAKVQIEKGPYDGRVLKAMEYEDICKVA 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01906 708 Pfam Domain of Kin17 curved DNA-binding protein 362 487 IPR019447 -
Cca05g01906 708 SUPERFAMILY Sm-like ribonucleoproteins 4 90 IPR010920 -
Cca05g01906 708 MobiDBLite consensus disorder prediction 556 580 - -
Cca05g01906 708 PANTHER BNAA05G13760D PROTEIN 311 708 - -
Cca05g01906 708 SMART Sm3 7 85 IPR001163 -
Cca05g01906 708 CDD Sm_B 5 86 - -
Cca05g01906 708 Pfam LSM domain 9 84 IPR001163 -
Cca05g01906 708 MobiDBLite consensus disorder prediction 218 246 - -
Cca05g01906 708 Gene3D - 1 94 - -
Cca05g01906 708 Gene3D - 652 708 IPR014722 -
Cca05g01906 708 Coils Coil 464 493 - -
Cca05g01906 708 CDD KOW_KIN17 654 707 IPR041995 -
Cca05g01906 708 SUPERFAMILY beta-beta-alpha zinc fingers 336 376 IPR036236 -
Cca05g01906 708 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 311 708 IPR037321 -
Cca05g01906 708 Gene3D - 598 651 - -
Cca05g01906 708 SMART Kin17_mid_2 362 488 IPR019447 -
Cca05g01906 708 Coils Coil 571 591 - -
Cca05g01906 708 Pfam KN17 SH3-like C-terminal domain 590 643 IPR041330 -
Cca05g01906 708 MobiDBLite consensus disorder prediction 83 194 - -
Cca05g01906 708 Gene3D - 370 470 IPR038254 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01906 311 708 C2H2 Transcription Factor Family AT1G55460 69.712 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01906 K13102 - gmx:100785931 745.347