Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01903 ATGGAACCCAACTTGGGTTATTCCAAGATGCTCTTTTTACTCCTTTGTTCCACTTCATTATTTTTCCTCTCACACTTGGCTTATGCAGCAACTCCCAAGCTCAACTCTCAAGAGGTGAAGGCATTGAAAGAGATAGGGATGAAGATTGGGAAGAAGGATTGGGACTTTGGGGTGGATCCTTGCACTGGAAAAGGGAATTGGAATGTGTCTGATGTGAGGAAAGGCTTTGAGAGTTCTGTGACTTGTGATTGTTCCTTCAATCAGAATTCTTCTTGCCATGTTGTAAGCATATCCCTGAAGGCTCAGAATCTGACTGGTACTCTCTCACCAGAGTTTTCCAAGCTTCGTTATCTCAAACAGTTGGACCTTAGTCGTAACATCATCACTGGTTCAATACCACTACAATGGTCTACCATGAGCTTGATTGAGCTCTCTTTGATGGGAAACAGATTATCAGGGCCATTCCCCAAAGTTCTCACCAATATTACAACCCTCAAAAACTTGAGTATTGAAGGAAATCAATTTTCAGGCCTCATTCCAACGGCGGTTGAGAAGTTGAACAATTTAGAAAAACTCATTCTGTCATCCAATGCATTCACAGGAGCATTACCACCTGCGCTTTCCAAGTTGACTAACTTGACTGATTTGAGAATAAGCGACAATAATTTCTTTGGGAAGATACCTGATTTTATTAGTAATTGGACATTGATTGAAAAACTGCATATGCACGGTTGCTCTCTTGAGGGGCCCATACCTTCTAGCATTTCTGCTTTGACAAGATTAAGTGATTTGAGGATAACTGACCTAAAAGGTAGTAAAGGCTCTACTTTCCCACCACTAAATAATATGAAATCCATGAAAACACTGATATTGAGAAAATGCATGATTAAAGGAAAAATCCCAGATTACATTGGGAGAATGGATAAACTGAAAATTTTAGATTTGAGTTACAATGGCTTGAGTGGAGAGATACCCAAATCTTTTGCCGAACTGGACAAAGTAGATTTCATGTATCTTACTGGGAACAAGTTATCAGGGATTATACCTGGCTGGGTCCTTGGAAATAATAAGAATATTGATATCTCTGACAATAACTTCGCCTGGGATAGCTCAAGTCCAACTGAATGTCAACGAGGGAGCATAAACCTTGTTGAGAGCTACTCTTCATCCGTGGATACACAAAATAAGATTCATTCATGCTTAAAAAGAAACTTTCCATGCCCTGCTTCAGTAAGCCAATATCAGTACTCCCTGAACATCAACTGTGGTGGTAACGAAGCAAATATTAGCGGTCATATTTATGAAGCTGATGGAGAACGAAAAGGCGCTGCAATGTTATATTACACTAGCCAGGATTGGGCTCTAAGTAGCACTGGAAACTTCATGGACAATGATATTGACTCTGATCCCTATATTGTGGTCAATACTTCTAGACTTAATGTCTCTAGAGTCAATTCACAGCTATACACAACAGCTCGGGTGTCTCCCCTTGCTCTCACATACTATGGCCTCTGCCTGATAAATGGAAATTACACCGTTAATCTTCACTTTGCGGAGATTATTTTCATCAATGATAAGTCATTTAACAGTCTTGGGAGGCGAGTATTTGATGTCTATATCCAGGGGAATTTAGTGCTGAAAGACTTTGATATCCAAAGACAAGCTGGCGGTACTGGCAAGCCAATTGTGAAGACATTTAATGCAACTGTCACCCAACATACTTTGAAGATCCACTTCTACTGGGCTGGAAAAGGAACCACTGGCATACCCACAAGAGGAGTTTATGGACCTCTAGTATCTGCTATTTCAGTAAACCCTAATTTTAAACCTCCATCAGGGGATGGCAACAGAACTTATGTCATACTGGCAGTTAGCATAgttgctggtgttgtagttgttgttcttcttgtGCTGGGTGTCTTGAGGAGAATGGGATGGTTAGGAGGCAAAGACCCAGTGTACAAAGAGCTTAGAGGTATAGATTTGCAGACGGGATTATTTACGCTAAGACAAATCAAAGCAGCAACCAAAAACTTTGATGCGGAAAATAAAATTGGCGAAGGTGGCTTTGGTTGTGTTTACAAGGGCCTACTATCAGATGGTACCATAATAGCAGTAAAGCAGCTCTCTTCAAAATCTAAACAAGGAAATCGTGAGTTTGTGAATGAGATGGGATTGATATCTGGACTTCAGCATCCGAATCTTGTTAAGCTTTATGGATGTTGTGTGGAGGGGAACCAGCTTATACTGATATATGAGTATATGGAAAATAATTGTCTATCTCGCCTTCTTTTCGGGAAGGATCCAGACAGTAGGAAAAAACTAGATTGGCCAACCAGGAAGAAAATTTGCCTTGGTATAGCTAAAGCTATGGCTTATCTCCATGAAGAGTCCAGAATAAAAATCATACATAGGGATATAAAGGCAAGTAATGTCTTGCTCGACAAGGATTTTAACGCTAAAGTTTCAGATTTTGGCTTGGCAAAACTTATTGAAGATGACAAAACCCATATTAGCACTCGAGTTGCAGGAACAATGTAA 2541 0.3971 MEPNLGYSKMLFLLLCSTSLFFLSHLAYAATPKLNSQEVKALKEIGMKIGKKDWDFGVDPCTGKGNWNVSDVRKGFESSVTCDCSFNQNSSCHVVSISLKAQNLTGTLSPEFSKLRYLKQLDLSRNIITGSIPLQWSTMSLIELSLMGNRLSGPFPKVLTNITTLKNLSIEGNQFSGLIPTAVEKLNNLEKLILSSNAFTGALPPALSKLTNLTDLRISDNNFFGKIPDFISNWTLIEKLHMHGCSLEGPIPSSISALTRLSDLRITDLKGSKGSTFPPLNNMKSMKTLILRKCMIKGKIPDYIGRMDKLKILDLSYNGLSGEIPKSFAELDKVDFMYLTGNKLSGIIPGWVLGNNKNIDISDNNFAWDSSSPTECQRGSINLVESYSSSVDTQNKIHSCLKRNFPCPASVSQYQYSLNINCGGNEANISGHIYEADGERKGAAMLYYTSQDWALSSTGNFMDNDIDSDPYIVVNTSRLNVSRVNSQLYTTARVSPLALTYYGLCLINGNYTVNLHFAEIIFINDKSFNSLGRRVFDVYIQGNLVLKDFDIQRQAGGTGKPIVKTFNATVTQHTLKIHFYWAGKGTTGIPTRGVYGPLVSAISVNPNFKPPSGDGNRTYVILAVSIVAGVVVVVLLVLGVLRRMGWLGGKDPVYKELRGIDLQTGLFTLRQIKAATKNFDAENKIGEGGFGCVYKGLLSDGTIIAVKQLSSKSKQGNREFVNEMGLISGLQHPNLVKLYGCCVEGNQLILIYEYMENNCLSRLLFGKDPDSRKKLDWPTRKKICLGIAKAMAYLHEESRIKIIHRDIKASNVLLDKDFNAKVSDFGLAKLIEDDKTHISTRVAGTM 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01903 846 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE-RELATED 70 845 - -
Cca05g01903 846 Gene3D Phosphorylase Kinase; domain 1 653 754 - -
Cca05g01903 846 Pfam Leucine rich repeat 164 223 IPR001611 GO:0005515
Cca05g01903 846 Pfam Leucine rich repeat 286 344 IPR001611 GO:0005515
Cca05g01903 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Cca05g01903 846 Gene3D - 413 607 - -
Cca05g01903 846 Gene3D Ribonuclease Inhibitor 51 197 IPR032675 -
Cca05g01903 846 Gene3D Ribonuclease Inhibitor 270 380 IPR032675 -
Cca05g01903 846 Gene3D Ribonuclease Inhibitor 198 269 IPR032675 -
Cca05g01903 846 SUPERFAMILY Protein kinase-like (PK-like) 664 845 IPR011009 -
Cca05g01903 846 ProSiteProfiles Protein kinase domain profile. 679 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01903 846 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 70 845 - -
Cca05g01903 846 SUPERFAMILY L domain-like 68 368 - -
Cca05g01903 846 Gene3D Transferase(Phosphotransferase) domain 1 755 846 - -
Cca05g01903 846 Pfam Protein tyrosine and serine/threonine kinase 681 838 IPR001245 GO:0004672|GO:0006468
Cca05g01903 846 Pfam Malectin domain 417 602 IPR021720 -
Cca05g01903 846 ProSitePatterns Protein kinases ATP-binding region signature. 685 707 IPR017441 GO:0005524
Cca05g01903 846 SMART serkin_6 679 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01903 Cca-Chr5 38857670 38870402 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01903 39 846 Receptor kinase-like Gene Family AT1G53430 51.163 0.0 812
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca05g01903 Malectin 5.3e-45 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01903 - - gmx:100784864 1479.92