Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01899 ATGGCTCCCATGCATGTGCAGAATGCTCGCGAAGTCCCTGAGTATGAGATTCATCCTTCTGAGCTTGATTTTACTAATAGCGTTTGCATAACAAAGGGAACTTTCCGGATTGCTTTATGGCGCGGAACTCAGGTTGCCGTCAAGACACTTGGGGAGGAATTGTTCACTGATGATGATAAAGTAAAGGCATTTCATGATGAGCTTACATTACTCCAGAAAATAAGGCATCCAAATGTGGTACAGTTTTTGGGCGCTGTAACTCAAAGCACCCCGATGATGATTGTCACAGAATATCTACCCCAGGGGGATCTCCGTGCCTACTTGAAGCGGAAAGGTGCATTAAAACCAATAACAGCTGTAAAGTTTGCACTTGATATTGCTAGGGGTATGAACTATTTGCATGAACATAAGCCAGAAGCCATAATACACCGAGATCTTGAGCCTTCAAATATACTGCGGGATGATTCTGGGCATCTGAAAGTTGCAGACTTTGGAGTTAGCAAGTTGCTTAAAGTTGCTAAAACAGTCAAAGAAGACAAACCCGTGACATGCCTGGATACATCATGGCGTTATGTAGCTCCAGAGGTGTATAGAAATGAGGAGTATGACACAAAAGTGGATGTGTTTTCATTTGCTCTCATATTACAGGAGATGATCGAAGGTTGTCCACCATTTTATGCTAAGCCAGAAAATGATGTTCCTACAGCATATGTTGAAAATGAGCGTCCACCATTTAGAGCTTTGCCAAAGCTTTATGCTTATGGACTAAAACAGTTAATCGAGGAATGCTGGGATGAACTACCATACAGAAGACCAACATTTAGGGAAATAATTAGGAGATTGGAAGACATCAGCTACCATCTTGCTCAAAAGAGGCACTGGAAGATTCGGGCTCCTGCATGCATCCAGAACCTGGAGACCCTGTTTAGGGGTAATGGCACAAGCCCAAGTAGCCGATCATCTCGCTCTACGAACAGATAA 981 0.4322 MAPMHVQNAREVPEYEIHPSELDFTNSVCITKGTFRIALWRGTQVAVKTLGEELFTDDDKVKAFHDELTLLQKIRHPNVVQFLGAVTQSTPMMIVTEYLPQGDLRAYLKRKGALKPITAVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKVAKTVKEDKPVTCLDTSWRYVAPEVYRNEEYDTKVDVFSFALILQEMIEGCPPFYAKPENDVPTAYVENERPPFRALPKLYAYGLKQLIEECWDELPYRRPTFREIIRRLEDISYHLAQKRHWKIRAPACIQNLETLFRGNGTSPSSRSSRSTNR 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01899 326 PANTHER INTEGRIN-LINKED KINASE FAMILY PROTEIN 1 309 - -
Cca05g01899 326 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 309 - -
Cca05g01899 326 PRINTS Tyrosine kinase catalytic domain signature 96 109 IPR001245 GO:0004672|GO:0006468
Cca05g01899 326 PRINTS Tyrosine kinase catalytic domain signature 252 274 IPR001245 GO:0004672|GO:0006468
Cca05g01899 326 PRINTS Tyrosine kinase catalytic domain signature 206 228 IPR001245 GO:0004672|GO:0006468
Cca05g01899 326 PRINTS Tyrosine kinase catalytic domain signature 135 153 IPR001245 GO:0004672|GO:0006468
Cca05g01899 326 Gene3D Transferase(Phosphotransferase) domain 1 100 301 - -
Cca05g01899 326 SUPERFAMILY Protein kinase-like (PK-like) 30 283 IPR011009 -
Cca05g01899 326 PIRSF ILK 1 304 - -
Cca05g01899 326 ProSiteProfiles Protein kinase domain profile. 1 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01899 326 Gene3D Phosphorylase Kinase; domain 1 17 99 - -
Cca05g01899 326 CDD STKc_MAP3K-like 38 281 - -
Cca05g01899 326 Pfam Protein tyrosine and serine/threonine kinase 41 281 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01899 Cca-Chr5 38835114 38841649 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01899 1 304 MAP Kinase Kinase Kinase AT4G18950 68.421 1.86e-150 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Cca05g01899 PK_Tyr_Ser-Thr 1.8e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01899 - - gmx:100795964 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01899 05 38835114 38841649 Cca03g01292 03 30608679 30615149 PCT