Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01896 ATGGAGTTTCCAAACGAAGCAATATCAGAAGGGTCTTCTCAGAAGAAAacgggaagagggaaaatagaaatcaagaggatcgagaacacaacgaatagacaagttaccttctgcaagagacgcaacggtttgctcaagaaggcttatgaattgtctgttctctgtgatgctgaagttgcccttgttgtcttctctagccgtggccgtctctatgagtatgccaacAACAGTGTTAGAGGAACCATCGATAGGTACAAGAAAGCATGTGCTGCTTCCACAAATGCTGAATCTGTCTCTGAAGCTAATACACAGTTTTATCAGCACGAATCGTCCAAATTAAAAAGACAAATCAGAGACATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCTCTAAGCTCTCTGAGTCTAAAGGAATTAAAAAACCTCGAGAGTAGATTGGAGAAGGGTTTAAGCAGAGTTAGATCCAGAAAGCATGAAACATTGTTTGCCGATATCGAGTTCATGCAAAAGCGGGAAATGGAGCTGCAAAACCATAACAATTTTCTGCGAGCTAAGATAGGTGAACATGAGAGAGCACAGGAACGGCAAGCGGATATGATGGGAGGAAGTGTGTGTGAGTCCATAGCTTCAGAATCATATGACAGAAATTTCTTCCCTGCTGCAGTAAATCTCATTGATTCCAATTCCAATCATCAATATTCATGTCAAGACCACACTGCTCTTCAACTTGTCTGA 738 0.3103 MEFPNEAISEGSSQKKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIDRYKKACAASTNAESVSEANTQFYQHESSKLKRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADIEFMQKREMELQNHNNFLRAKIGEHERAQERQADMMGGSVCESIASESYDRNFFPAAVNLIDSNSNHQYSCQDHTALQLV 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01896 245 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Cca05g01896 245 MobiDBLite consensus disorder prediction 1 20 - -
Cca05g01896 245 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Cca05g01896 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 13 216 - -
Cca05g01896 245 SUPERFAMILY SRF-like 18 94 IPR036879 GO:0003677|GO:0046983
Cca05g01896 245 CDD MADS_MEF2_like 18 92 IPR033896 GO:0000977|GO:0045944
Cca05g01896 245 Pfam K-box region 101 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca05g01896 245 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 13 216 - -
Cca05g01896 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Cca05g01896 245 Gene3D - 29 98 IPR036879 GO:0003677|GO:0046983
Cca05g01896 245 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Cca05g01896 245 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Cca05g01896 245 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Cca05g01896 245 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Cca05g01896 245 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca05g01896 245 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01896 Cca-Chr5 38777575 38783032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01896 10 245 MADS-box Gene Family AT3G58780 67.623 1.05e-112 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca05g01896 K-box 1.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01896 K09264 - gmx:100792224 411.379