Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01892 ATGTTTGGGGACATTATCTATTTTATTTCTTGGGGTTTGTTTCCCCTGCTACTTTTTCTAGTCTCTTGCAATTTCTTGAGGCACAAGCAATGCTACAAAGACAAAAGAAAGGTGCCACCAGGGGAAATGGGTCTTCCATTCATAGGGGAGACAATGGAATTCTTCAATGCTCATAGGAGAAACCAATTGTTTGAAGTGTTTGTTCATCCCAGGATTCTGAAACATGGGAACATCTTCAAAACAAGGATCATGGGGTCTCCAACAGTGGTCGTGAATGGAGCTGAGGCAAATAAATTCTTGTTGTCTAATGAGTTCAAGTTGGTGAAAAGTTCTTGGCCTTCTTCCTCGGTTCAGCTCATGGGAAGCGACTCAATCATGGAGAAAGATGGTGAAAGGCACCGATTCCTACGTGGTGTTATTGGCACAAGTCTTGGTTATGCTGGTCTTGAGCTACTAGTTCCAAAACTGTGCAATTCTGTTAAGCTTCATTTGGCTACAAAGTGGAAGGGCCAAGAAGAGATTAGTCTTTACCGTTCAACAAAAGTCCTCAGTTTTAGCATAGTGTTTGAGTGTTTGTTGGGGATCAAAGTGGAGCCAGGTATGCTAGATATCTTTGAGAAGGTATTGGAAGGAGTGTTCTCTCCAGCAGTTATGCTTCCAGGTTCTAAGTTTTGGAGAGCAAAGAAGGCCAGGGTGGAGATAGAGAAGATGTTGGTCAAAGTGGTGAAAGAGAAGAGAAGGGAAATGGAAGGAAGCTTGCAAAGAGAACAAGATGGAATGCTGCTGTCAAAGTTGGTGTATGGGATGATCCAAGGGGAGATCAGTGAAAAAGAGGTCATAGACAATGTGGTGCTGCTGGTTTTTGCAGCTCATGATACTACTTCTTTTGCTGTTGCTATGACATTCAAGATGTTGGCTCAGCACCCTGATTGCTATGGAAAACTTCTTCAAGAACATGTTGCTATAATTAGCAACAAAAGATGGGATGAGAATGTAACATTGGAGGACATAAAGAAGATGAAGTATACCTGGCAAGTTGCTAGAGAAAGCATGAGATTGTTCCCTCCTATCTTTGGTTCTTTCAGGAAGGCTATTACTGATATTGAATATGAAGGATTCATTATACCAAGAGGATGGAAGGTGCTATGGACAACATATGGAACACATTACAATGAAGATTATTTTAAGGATCCAATGAGTTTCAACCCTGGTAGGTTTGAGGAGGGAATACCCCAATATGCATTTGTTCCATTTGGAGGAGGACCAAGAGTGTGTGCAGGTTACCAATTAGCTAAGTTAAATATCCTCATTTTTGTGCATTATGTTGTGACCCAATATGAGTGGTTCTTACTCCATCCAGATGAGCCAATTGCAATGGATCCCCTACCTTTCCCTTCCCTTGGAATGCCCATCAGAATTTCTCCCAAGTCCACATCAAATGAAACAACCACAAAATGA 1458 0.4163 MFGDIIYFISWGLFPLLLFLVSCNFLRHKQCYKDKRKVPPGEMGLPFIGETMEFFNAHRRNQLFEVFVHPRILKHGNIFKTRIMGSPTVVVNGAEANKFLLSNEFKLVKSSWPSSSVQLMGSDSIMEKDGERHRFLRGVIGTSLGYAGLELLVPKLCNSVKLHLATKWKGQEEISLYRSTKVLSFSIVFECLLGIKVEPGMLDIFEKVLEGVFSPAVMLPGSKFWRAKKARVEIEKMLVKVVKEKRREMEGSLQREQDGMLLSKLVYGMIQGEISEKEVIDNVVLLVFAAHDTTSFAVAMTFKMLAQHPDCYGKLLQEHVAIISNKRWDENVTLEDIKKMKYTWQVARESMRLFPPIFGSFRKAITDIEYEGFIIPRGWKVLWTTYGTHYNEDYFKDPMSFNPGRFEEGIPQYAFVPFGGGPRVCAGYQLAKLNILIFVHYVVTQYEWFLLHPDEPIAMDPLPFPSLGMPIRISPKSTSNETTTK 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01892 485 SUPERFAMILY Cytochrome P450 33 475 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g01892 485 PRINTS P450 superfamily signature 289 306 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g01892 485 PRINTS P450 superfamily signature 345 356 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g01892 485 PRINTS P450 superfamily signature 416 425 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g01892 485 PRINTS P450 superfamily signature 425 436 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g01892 485 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 418 427 IPR017972 GO:0005506|GO:0016705
Cca05g01892 485 PANTHER CYTOCHROME P450 26 17 475 - -
Cca05g01892 485 PANTHER TAXADIENE 5-ALPHA HYDROXYLASE 17 475 - -
Cca05g01892 485 Pfam Cytochrome P450 39 466 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g01892 485 PRINTS E-class P450 group I signature 72 91 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g01892 485 PRINTS E-class P450 group I signature 278 295 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g01892 485 PRINTS E-class P450 group I signature 298 324 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g01892 485 PRINTS E-class P450 group I signature 384 408 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g01892 485 PRINTS E-class P450 group I signature 415 425 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g01892 485 PRINTS E-class P450 group I signature 425 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g01892 485 Gene3D Cytochrome P450 28 476 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01892 Cca-Chr5 38738955 38740786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01892 40 381 Cytochrome P450 AT2G42850 66.959 3.52e-160 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01892 - - gmx:100793336 900.968