Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01888 ATGTTTGGCACATTCCCTGTGCCATGTAAGTTGGAGAAGGGACAGACATGTAATTCCGAGCTGGGGTGTTGCCTCAGAATGCAGCAAGATCACAAAAAAAAGAGTTCAATGGAGATGGAATTTTTCTCCGACTATGGCGATGCCAACAGGTATAAAATTCAAGAGGTCATTGGGAAAGGAAGCTATGGTGTTGTTTGTTCAGCTATTGACACTCATACTAGGGAAAAAGTGGCAATTAAAAAGATTCATGATATCTTCGAGCATGTATCCGATGCTGCACGTATTCTCCGTGAGATAAAGTTGCTTAGACTTCTTCGACATCCTGACATTGTTGAAATTAAGCATGTTATGATGCCTCCTTCTAGGAGGGACTTCAAAGACATTTATGTTGTTTTTGAGCTCATGGAGTCTGATCTGCATCAAGTCATTAAAGCCAATGATGACTTAACAAAGGAGCACTATCAATTTTTCCTTTACCAGTTACTTCGAGCATTGAAGTATATTCACTCTGCAAACGTCTATCATCGAGACTTGAAGCCAAAGAATATACTGGCCAATGCAAACTGTAAACTTAAAATATGTGATTTCGGGTTAGCTAGAGTTGCTTTCAGTGACACACCGACTACTGTATTTTGGACGGATTATGTTGCTACAAGGTGGTATAGAGCACCAGAGCTTTGTGGATCCTTTTACTCAAGGTATACTCCAGCAATTGATATTTGGAGTATAGGTTGCATCTTTGCTGAAGTATTAATAGGGAAGCCAGTGTTTCCTGGAAAAAATGTTGTCCATCAGTTAGATCTGATGACAGATCTGCTTGGCACTCCCCCGCTGGACACAATATCCCAGGTACGCAATGATAAGGCACGAAGATACCTCACTAGTATGAGGAAAAAGCAACCTATTCCATTTGAACAAAAATTTCCTAATGCAGATCCTTTAGCACTTCGACTACTAGAAAGGTTGCTTGCCTTTGATCCAAAAGACCGACCTACTGCTGAAGAGGCATTAGCTGATCCTTACTTCAAGGGACTTGCAAAAGTTGAGAGGGAACCATCCTGCCAGCCTATTACAAAAATGGAGTTTGAATTTGAAAGGCGGAGAGTCTCAAAGGAAGAAATTGGAGAGTTAATTTACCGTGAGATTCTAGAGTACCATCCTCAACTATTGAAAGACTACATAAATGGAACAGAGAGAACTAATTTTCTTTACCCAAGTGCTGTTGATCAATTCAAACAGCAGTTTGCTCAACTTGAGGAAACTGGCAGTAAAAGTTGTCCAGTTATGCCACTTGAAAGAAAGCATGCATCACTTCCCAGGTCAACAATTGTACATTCAAATATGATATCCTCAAAAGAGCAATCAAATATTGCTTCCTATAAAAACCGGCAAACAGCTGAGGAATATAACAATTCCAGGGATGCAGAAAATCCTGCGCCAAGGTCCATTCAGGGTCTGCAAAAATTCCCACTGGCAAAACCTGGTAAAGTTGTTGGGCCAGTTGTTCCTTACGATTATGCAAGTGTTGTCAAGGGTTCATATGATCCAAGGACATTTATGAGAGGTTCTGTTCTTCCTTCTCAACCTATCCCCCCTACGAATCATTGTCAAAGGTCAACCTCTGGTAAACAAGAAAGGTCAGCAATAGAAGTTGACAAGGGTGTGTCTTTACAATCAAAACTTGCCCAGCAATGTAGTGTGAATGCCAAGATAGCACCAGACATGGCTATAAATATTGATACCAACCCTTTTTTTATGACACGAGCAGGAGTGAACAAGATAGAGCAGGATGAAAGAATAGGCATTGACACAAAGTTGCTGCAGCCAAAGGCTCAACAATATGGCAGGATTGGTACCACTGCTCATAGAAAGGTTGGACCTGTTCAGTATGGTATGACAAGGTTGTTCTAG 1911 0.4097 MFGTFPVPCKLEKGQTCNSELGCCLRMQQDHKKKSSMEMEFFSDYGDANRYKIQEVIGKGSYGVVCSAIDTHTREKVAIKKIHDIFEHVSDAARILREIKLLRLLRHPDIVEIKHVMMPPSRRDFKDIYVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHSANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFYSRYTPAIDIWSIGCIFAEVLIGKPVFPGKNVVHQLDLMTDLLGTPPLDTISQVRNDKARRYLTSMRKKQPIPFEQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPITKMEFEFERRRVSKEEIGELIYREILEYHPQLLKDYINGTERTNFLYPSAVDQFKQQFAQLEETGSKSCPVMPLERKHASLPRSTIVHSNMISSKEQSNIASYKNRQTAEEYNNSRDAENPAPRSIQGLQKFPLAKPGKVVGPVVPYDYASVVKGSYDPRTFMRGSVLPSQPIPPTNHCQRSTSGKQERSAIEVDKGVSLQSKLAQQCSVNAKIAPDMAINIDTNPFFMTRAGVNKIEQDERIGIDTKLLQPKAQQYGRIGTTAHRKVGPVQYGMTRLF 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01888 636 CDD STKc_TDY_MAPK 50 387 - -
Cca05g01888 636 ProSiteProfiles Protein kinase domain profile. 51 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01888 636 MobiDBLite consensus disorder prediction 452 478 - -
Cca05g01888 636 ProSitePatterns Protein kinases ATP-binding region signature. 57 81 IPR017441 GO:0005524
Cca05g01888 636 ProSitePatterns MAP kinase signature. 86 189 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cca05g01888 636 MobiDBLite consensus disorder prediction 524 547 - -
Cca05g01888 636 SUPERFAMILY Protein kinase-like (PK-like) 47 346 IPR011009 -
Cca05g01888 636 MobiDBLite consensus disorder prediction 452 481 - -
Cca05g01888 636 SMART serkin_6 51 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01888 636 Gene3D Transferase(Phosphotransferase) domain 1 137 365 - -
Cca05g01888 636 Gene3D Phosphorylase Kinase; domain 1 66 388 - -
Cca05g01888 636 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 35 518 - -
Cca05g01888 636 MobiDBLite consensus disorder prediction 527 544 - -
Cca05g01888 636 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 35 518 - -
Cca05g01888 636 Pfam Protein kinase domain 51 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01888 Cca-Chr5 38706244 38712804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01888 27 471 MAP Kinase Gene Family AT2G42880 84.045 0.0 781
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Cca05g01888 Pkinase 5.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01888 - - aprc:113848523 1048.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01000 09 29986327 29993402 Cca05g01888 05 38706244 38712804 PCT