Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01887 ATGTCGGTCGCAAAGCAAATGATCCCTCAACAAGAACCCGATTTCAACCTCAATCATCTCAAACTATATTACGGAAAGCTGTTTCCTTTTGCTGATTTAGTCAGATGGGTGTCTTATGGAAACGATGGGAAGCACCCTGGTTGTGATCAATCTTACTTGGGGCGAAGAGAGTTTTCCTTTACTCTGGAGAGTGATATATATCTGCGTTTTCAATCTTTCAACAACGCCATTGAGCTTGAAAACTCCATCAAAGAAAAGTCCCCTGTTAAGATAGATATTGGACCTGTCTACACTGTTGATCCTGCTAAAAGGAATGCCTATGCACAGAGTGAAAATAATGTTTTTGCCCCAGTTGAGAGGGAGTTGATTTTTGATATAGATATGTCAGATTACGATGATGTTAGATACTGCTGTTCGGGTGCTGATGTTTGTTTGGTTTGCTGGCCGTTGATGACTATAGCGATCAAAGTGATTGATACTGCCTTAAGAGATGACTTTGGTTTCAAACACATTCTCTGGGTATATAGTGGACGCAGAGGTGTTCATTGTTGGGTCTGTGATGGGAAGGCAAGAAGGTTGACTAATGAGCAAAGAGCTGCTGTTGCTGACTATTTTCGTGTCTATAAGGGCAATGAAAATAGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTGCATCCTTTCTTGGCGACATCATACACTAATGTTCTCAAGGACTATTTTGAGAAAAAGCTGCTTACTGATCAAGATATACTTGGTACTGAGGAGAGATATGAGAAGATCCTTAACATGATTCCTGATGAATCTATTGCGTCTGAACTTAGGGGAAGATGGCAAGATAGTAGGAGGTCTTCTAGTGCCAAAGAAGACATCAATGTTGTTCGATGGGAACAGTGTAAACAGTTGCTGCAATCTGGAAAACATAAGTCACAAGGGCTGCGTCGTTGCGTTGAAGAGATTGTGTTCTGTTTTACTTATCCCAGGCTAGATATGGAGGTTTCTAAACATATGAATCATTTGCTTAAAGCACCATTCTGTGTACATCCTAAAACAGGCCGTGTTTGTGTCCCTATTGATCCAAATCGGTGCGAGGAGTTTGATCCTACTACAGTACCCACCCTTTCACAGCTGATAGAAGAGCTTAATAATGAAGGCTCAAAAGCTGATGTTGATGGTGAATGGAATAGAACTTCGCTTGGAAATGCCATTACGTTCTTCAGATCGTCATTCTTACAGCCTTTATTAAAAGCCTGCAAGGAGGAGATAGAAAATTCCTATAACTTAAAATTGCAGCAGTCAAAGAATTCCCTTGGTTGGTAG 1320 0.4098 MSVAKQMIPQQEPDFNLNHLKLYYGKLFPFADLVRWVSYGNDGKHPGCDQSYLGRREFSFTLESDIYLRFQSFNNAIELENSIKEKSPVKIDIGPVYTVDPAKRNAYAQSENNVFAPVERELIFDIDMSDYDDVRYCCSGADVCLVCWPLMTIAIKVIDTALRDDFGFKHILWVYSGRRGVHCWVCDGKARRLTNEQRAAVADYFRVYKGNENSHKKVSLMGAALHPFLATSYTNVLKDYFEKKLLTDQDILGTEERYEKILNMIPDESIASELRGRWQDSRRSSSAKEDINVVRWEQCKQLLQSGKHKSQGLRRCVEEIVFCFTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVCVPIDPNRCEEFDPTTVPTLSQLIEELNNEGSKADVDGEWNRTSLGNAITFFRSSFLQPLLKACKEEIENSYNLKLQQSKNSLGW 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01887 439 Pfam DNA primase small subunit 124 359 IPR002755 GO:0003896|GO:0006269
Cca05g01887 439 CDD AE_Prim_S 29 368 IPR014052 GO:0003896|GO:0006269
Cca05g01887 439 PANTHER DNA PRIMASE SMALL SUBUNIT 26 439 IPR014052 GO:0003896|GO:0006269
Cca05g01887 439 TIGRFAM primase_sml: putative DNA primase, eukaryotic-type, small subunit 21 380 IPR014052 GO:0003896|GO:0006269
Cca05g01887 439 SUPERFAMILY Prim-pol domain 17 383 - -
Cca05g01887 439 Gene3D DNA primase, PRIM domain 5 420 - -
Cca05g01887 439 PANTHER DNA PRIMASE 26 439 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01887 9 439 Core DNA Replication Machinery Family AT5G41880 67.593 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01887 K02684 - gmx:100780574 855.514