Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01886 ATGGACAAACATTCTGGGGATTCTATGCCAACTCATGGTGTAGCAGGTAGATCTGAGTTTTTCTCGCTTAAATCTGCCAAAGAAATGGGAAGCAGTGCATGGGGAATACCAGGTGGGACTGATTCATTTCATGCTTCAAGTGATGCTAGCTTGTTTTGTAGTTCACTTCCTGTTTTTCCACATGAAAAGTTAAAAATTACTAATTCAGAGCATTACGGTCAATCTGTTGATGATGACTGGCCAGTATTAGGCAAAGTTCTCAAAGGGGTTGGGGGACAGGATCCACTTGGACATATTGAAATTGGTGCAGTTGGAAACATGCTTCCTGATGATGATGAGCTATTGGCCGGTATAACTGATGATTTTGATCTGAGTGGGTTGCCCAGCCAATTGGAGGATCTGGATGAAAATGATCTTTTTGGCAGTGGAGGGGGGTTTGAAATGGATTTTGAACCTCAAGAGAGCCTTAGTGTTGGTATAGCAAAGGTAAGCTTATCTGATGAAGTTCATTCGAATGGTATTGGTCACTATGCAATTCCAAATGGCATGGGAACAGTGGCTGGGGAACATCCTTATGGAGAGCATCCATCAAGGACACTATTTGTGCGGAACATCAACAGTAATGTTGAGGACTCTGAATTAAGATCACTATTTGAGCAATATGGGGATATCAGAACACTGTACACTGCATGCAAGCACAGGGGTTTTGTGATGATATCGTACTATGACATTCGATCTGCTCGCACTGCAATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGATATTCATTTTTCAATTCCTAAGGACAACCCCTCAGAAAAGGATATTAACCAAGGAACACTTGTAGTGTTCAATTTGGATCCCTCGGTATCAAATGATGACCTTCGTTTAATATTTGGGGCTTATGGAGAGGTCAAAGAGATCAGGGAAACACCACATAAGAGACACCATAAATTTATTGAATTTTATGATGTTAGAGCAGCAGAGGCTGCCCTAAAAGCATTAAATCAAAGTGACATCGCTGGGAAGCGCATCAAACTTGAACCCAGCCGCCCTGGTGGAGCACGTCGAAACTTGATGCAACAACTGAGTCAAGAATTGGAGCAAGATGAAGCTCGAACTTTTAGACAACAAGTGGGTTCACCTGTTGGCAATTCTCCTCCTGGTAACTGGGCACAATTTGGTAGTCCAGTTGAACATAATGCATTAGGTTCTTTTAGCAAATCCCCTGGTTTGAATTTTGGGAGCCCAATGAATACCAACCTTTTGCCTGGATTGGCTGCAATTCTTTCTCCACAATTATCAAGTTCTCCAAAGATTGCTCCAATTGGCAAGGACCTAGGAAGGGCTAATAATGCAAAGCAGATATTTGCAAGCTCAGGATCATCACAAGGAGCTGCTTTTCAGCATTCTACATCATTTCCTGAGCAAAAAGTAAATGCATTTCCTAGGCCTATATCTACTTTTGGTGAATCAAATTCAAGTTCTTCAAGTATTGGAACATTGTCTGGTCCTCAATTTCTTTGGGGAAGTCCAACTCCTTACTCAGAGCATTCAAACACATCTGCCTGGTCTTCATCTTCTGTGGGGGTTCCATTTACTTCTACTGGACAAAGGCAGGTTTTCCCATATACTAGTCGGCACAGTTCTTTTCTTGGTTCTCATCCACTTCATCATGTGGGATCTGCTCCACCTGGCCTTCCTCTTGATAGACATTTTAGCTACTTCCCAGAGTCACCTGAAACTTCTCTCAAGAGCCCGGCTGCATATGGGAATATGAATCACAGTAATGGGAATATTTTGATGAACATGGGTGGTCATGCATCTCTAGGTATCAGTGTTGGGCTTTCAGGAAATACTTCTGAAATGAGTTCACCCAATTTTGGAATGATGTCACTACCCAGGCAAGGTTCCCTGTTCCTTGGTAATGGTTTGTATTCTGGACCAGGAGCTACTAATACTGACGGATTAGCTGAACGTGGTCGAAGTAGGCGACCTGACAATAGTGGGAACCAAATTGATAGTAAGAAGCAGTATCAGCTTGATTTGGACAAAATTATGAGTGGGGAAGACACAAGGACTACCTTAATGATTAAAAACATTCCTAACAAGTACACTTCAAAGATGCTGCTTGCTGCAATTGATGAGAATCACCAGGGTAGTTACGACTTTCTCTACTTGCCAATTGACTTTAAGAACAAGTGTAACGTTGGGTATGCTTTCATCAATATGGTGTCTCCTTCACACATCATCCCCTTCTATAAGGCATTTAATGGGAAAAGGTGGGAGAAATTTAATAGTGAGAAAGTTGCTTCCCTAGCATTTGCACGGATCCAGGGAAAGGGTGCGTTAGTGACACATTTTCAGAATTCAAGCCTCATGAATGAGGATAAGTGGTGCCGACCAATTCTCTTTCATTCTGAGGGTCAAGGGATTGACGACCAGGAACATTTCCTCTCAAGCAATTTGAATATATGCATTCGTCAACCAGATGGTTCTTACTCAGGTGATTTGTTGGAGAGCCCCAAGGGCAATTTGGAAGAAAAAGATTAA 2565 0.4222 MDKHSGDSMPTHGVAGRSEFFSLKSAKEMGSSAWGIPGGTDSFHASSDASLFCSSLPVFPHEKLKITNSEHYGQSVDDDWPVLGKVLKGVGGQDPLGHIEIGAVGNMLPDDDELLAGITDDFDLSGLPSQLEDLDENDLFGSGGGFEMDFEPQESLSVGIAKVSLSDEVHSNGIGHYAIPNGMGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRSARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRLIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNQSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRQQVGSPVGNSPPGNWAQFGSPVEHNALGSFSKSPGLNFGSPMNTNLLPGLAAILSPQLSSSPKIAPIGKDLGRANNAKQIFASSGSSQGAAFQHSTSFPEQKVNAFPRPISTFGESNSSSSSIGTLSGPQFLWGSPTPYSEHSNTSAWSSSSVGVPFTSTGQRQVFPYTSRHSSFLGSHPLHHVGSAPPGLPLDRHFSYFPESPETSLKSPAAYGNMNHSNGNILMNMGGHASLGISVGLSGNTSEMSSPNFGMMSLPRQGSLFLGNGLYSGPGATNTDGLAERGRSRRPDNSGNQIDSKKQYQLDLDKIMSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHQGSYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKRWEKFNSEKVASLAFARIQGKGALVTHFQNSSLMNEDKWCRPILFHSEGQGIDDQEHFLSSNLNICIRQPDGSYSGDLLESPKGNLEEKD 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01886 854 Pfam RNA recognition motif 2 697 793 IPR007201 -
Cca05g01886 854 SMART rrm1_1 284 352 IPR000504 GO:0003723
Cca05g01886 854 SMART rrm1_1 199 267 IPR000504 GO:0003723
Cca05g01886 854 SMART rrm1_1 699 775 IPR000504 GO:0003723
Cca05g01886 854 PANTHER PROTEIN MEI2-LIKE 2 11 851 - -
Cca05g01886 854 CDD RRM2_MEI2_like 282 352 - -
Cca05g01886 854 Gene3D - 282 380 IPR012677 -
Cca05g01886 854 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 356 IPR000504 GO:0003723
Cca05g01886 854 SUPERFAMILY RNA-binding domain, RBD 699 783 IPR035979 GO:0003676
Cca05g01886 854 CDD RRM3_MEI2_like 700 785 IPR034454 -
Cca05g01886 854 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 271 IPR000504 GO:0003723
Cca05g01886 854 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 350 IPR000504 GO:0003723
Cca05g01886 854 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 264 IPR000504 GO:0003723
Cca05g01886 854 SUPERFAMILY RNA-binding domain, RBD 195 358 IPR035979 GO:0003676
Cca05g01886 854 CDD RRM1_MEI2_like 197 273 IPR034453 -
Cca05g01886 854 PANTHER RNA RECOGNITION MOTIF-CONTAINING 11 851 - -
Cca05g01886 854 MobiDBLite consensus disorder prediction 655 679 - -
Cca05g01886 854 Gene3D - 186 281 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01886 Cca-Chr5 38685473 38693622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01886 138 391 Eukaryotic Initiation Factors Gene Family AT1G71770 23.944 5.39e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01886 - - gmx:100812324 1381.7