Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01880 ATGAAGCAGAAGAGAGCGATTTGCTCTTTGTTACTGCACTTTTGCCTTGCCTCAAAGTGTCTTATGTTTGGTGAAATGGACAGAAAGCAAGAACAAGACAAAGGGAACTCAAACATGTCTGGCATTGATGTTACTCTAATATCTCCCAAAGTTCCAAAAGCAGTTTCACCGGTTTCTTCTGCAGCAGACGGAGACACCTTAAGGCGGCCCAGGGGCCGGCCGGCCGGCTCCAAAAACAAACCTAAGCCACCAATAATTGTCACCAGAGACAGTGCTAATGCACTGAAGGCTCATGCCATGGAAGTGAGCTCTGGCTGTGATGTGAATGAAAGTTTGTTGAACTTTGCAAGGAGAAAGCAACGTGGCCTTTACATACTCAATGGAACAGGCTGTGTAACAAATGTGACTCTGCGCCAGCCAGGTTCATCTGGTGCCATTGTGACCCTTCATGGTAGATTTGAGATTCTTTCACTGCTGGGATCAATCCTTCCCCCACCAGCACCACCAGGGATCACAGGCCTCACAATTTATTTGGCTGGTGCTCAAGGGCAAGTTGTTGGAGGTGCTGTAGTTGGTGCTTTGATTGCTTCAGGCCCTGTTGTGATCATGGCTGCATCATTCATGCATGCTACTTTTGATCGTCTTCCATTAGAAGATGATGAACTTGCTGCTGCAATGCACAACCAGCATTACCAAAATGGACGTGCCCACCATCTTGATATCTCTGACTTATATGCAATGCCACAGAACCTGCTCATGAATGGTACAATGCCCCAAGAGATATACTCTTGGGCACCGGGGAGGAACTTGTCAAAAACCTGA 822 0.472 MKQKRAICSLLLHFCLASKCLMFGEMDRKQEQDKGNSNMSGIDVTLISPKVPKAVSPVSSAADGDTLRRPRGRPAGSKNKPKPPIIVTRDSANALKAHAMEVSSGCDVNESLLNFARRKQRGLYILNGTGCVTNVTLRQPGSSGAIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGAVVGALIASGPVVIMAASFMHATFDRLPLEDDELAAAMHNQHYQNGRAHHLDISDLYAMPQNLLMNGTMPQEIYSWAPGRNLSKT 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01880 273 Pfam Plants and Prokaryotes Conserved (PCC) domain 97 207 IPR005175 -
Cca05g01880 273 SUPERFAMILY AF0104/ALDC/Ptd012-like 92 224 - -
Cca05g01880 273 CDD DUF296 98 178 IPR005175 -
Cca05g01880 273 MobiDBLite consensus disorder prediction 55 86 - -
Cca05g01880 273 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 16 26 272 - -
Cca05g01880 273 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 26 272 IPR014476 GO:0003680
Cca05g01880 273 Gene3D - 94 238 - -
Cca05g01880 273 ProSiteProfiles PPC domain profile profile. 92 230 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01880 Cca-Chr5 38646256 38647077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01880 51 270 AT-hook Motif Nuclear Localized (AHL) Family AT2G42940 71.364 3.11e-102 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01880 - - vra:106765118 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01880 05 38646256 38647077 Cca05g01880 05 38646256 38647077 ECH