Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01879 ATGGTAGTGGAGACTCTAGTTCCTCTTCTTGAGGGCGACATGCGAGGCGTGAATGAAGGTCATTCAGCTCCGCTTTGCAGTGGGAATCTCAAAACACGGTCTTCCTCAAGAGATAACATGCAGGGTGCGGAACTCTGGACTAATGGACTTATTTGTGCTTTTGAATTCGTGAGGGGAAGGGGACCTACCAAGAACAAGGGGTTTCAAGGCAATCAAAGTGGAAACATTTTGCATGAATCAGATGGAGATGATTTGGGTGACCAGGATCACCAGCCAGCGCCACCTCATTTCTATTGCAAAGAGGGTCTTCCAAGGAGTTATTGGAGGCCAATTGGTTGGGATAGAATTTCGGAACTTGTCCAGGAAATGCATGATAATGATACAAAGCCGTTTGATTTCAAAGATGATGAGAGTGATGTTCCTGTTGCAATTGTAGCAACTCCTTACTGGGAATGGCCGGTGGGGCCCACTTGGTGGTGTCATTTGGATGCTGCTGATCCATTTGTTACTGCATGGTTTGGTAGTTCTCGCTGGTTGCATCCCGCTATCAGCATTGCTTTGCAAGAAGAAAGTAGGTTAATAAGTGATCGAATGAAACACCTTCTGTATGAGGTACCAGTTCGAGTTGCTGGAGGATTATTATTTGAACTTCTAGGGCAGTCTGCTGGTGATCCGTTAGCTGAGGAAGACGACATTCCCATTGTCTTACGGGCATGGCAGGCACAAAACTTTTTGGTGACTGCTTTGCATGTTAAGGGCTCAGCATCAAAGATCAACGTGTTAGGTATTTTAGAAGTTCAGGAACTGCTGGCTGCTGGAGGTGCTAACATACCACGCAGCATTCACGATGTTGTAGCACACCTAGCTTGTCGACTTGCCAGATGGGATGATAGGTTGTTTCGTAAACACATCTTTGGGGCTGCCGATGAAGTTGAATTGATGTTTATGAACAGGAGGAACCATGAAGATTTGCATCTGTTCACTATAATACTGAACCAAGAAATTACAAGATTATCGACCCAGGTTATAAGAGTGAAATGGGCACTCCATGCAAGAGAGGAAATTGTTTTTGAACTTCTTCAACAGTTGAGAGGAAATGCAACAAGAGCGTTGCTGGAAGGAGTAATGAATGGTACGAGGGAAATGATTGAGGAGCAAGAAGCTGTTCGAGATCGCTTATTCACAATCCAAGATGTCATGCAAAGCACAGTCCGGGCATGGTTGCAGGACAGAAGCCTCGCAGTTACCCATAATCTGGGAATATTTGGGGGTTGTGGCCTTGTTCTGTCCATCATCACCGGACTATTTGGCATAAATGTGGATGGAATACCTGGATCTTCAGGAAATCCTTATGCCTTTCTTCTATTCTCCGTGGCCCTCTTTGTGCTAGGGGTCGTGCTAATTGGAATTGGATTGCTTTATCTTGGGCTGAAAAAACCCATCATTGAAGAAAATGTTGCACTGAGAAAACTAGAGCTTCAAGAGCTAGTCAGGATGTTTGAACATGAAGCAGAAAGTCATGCGCAAGTACGAAAAACGCTGCCTCACAAAGATGTTCCTCGAACTGCATCAAAGCCATATGACTCTCAGCTGCACATACATGAGCACCTCCTGAGCCCTTGCTCCAGGAAAGAAGAAGCAGACTCACCAAACAGACCACCACTCAAGGAAGCCAAGAGTTCTTGTATTAACCTCATAGCCAACTTGTCCTTCAAGAAAGGGAAGATTATCCATCGCTCACGCTCTGCTCCGTCTGTATTATTCACTGACATGGGGGTAGATTTTCATGAGCCCTCTGAACCATATAAATCATCAACTTTAATAGTTAGGCTATCTTTTATCGGTGTTTTCTTGTATGTGGCAACTGGGGTTGCAGTTTACATGACTTCTGGGAGTTTCAAAGGCACTACCACTTTCAGGCCCGTAGATGCTGTGTACTTCACAATGGTAACTCTCTGCACTATTGGGTTTGGAGATATTGTTCCTGACTCCACGTTTACCAAGATCTTTACATGTGGTTTCATTTTGGTGGGTTTTGGATTTATTGGTTTTCTACTCAATGGATTGGTTGCATACATTTGTGATACACAAGAGGCATTCCTGTTGAGCATGATGGATGAGAATCGATACAAGAACATCCTCAGCACGTACATGGTTGATGAACAGAAAGGGAGAATGAGGATAAGAACCAAAGTATGTCTGGCTTTGGTTGTTGTCATTGGCTGCATTGCTATAGGAACAGTCACAGTGCATTATGCTGAGGACCTGAATTGGGCTGACAGTATTTATCTTTCCATGACTTCTGTTACAACGGTTGGTTATGGGGATTATTCTTTCAGAACTGTTATCGGAAGATGCTTTGCAATTATATGGCTCTTGGTAGGCACACTGGTAGTTGCCAGGGCACTTATATACCTCACTGAATATAGTATTCATAAGAGAAATCGTAAGATGGCAAAATGGGTTCTTCAGAAGAAGATAACCTTATCAGACTTAGCGGCTGCAGACCTTGATAATGATGGATCAATCAGTAAGTCTGACTTTGTCATATACAAGCTTAAGCAAATGGGGAAGATTAGTGAAATAGACATTCTGCAGATAAGCAAACAATTTGATTCCTTGGAACATGGCATGTATGGCAAGATTACTCTTGCTGACCTCATGGAAACTGTTTAG 2676 0.4361 MVVETLVPLLEGDMRGVNEGHSAPLCSGNLKTRSSSRDNMQGAELWTNGLICAFEFVRGRGPTKNKGFQGNQSGNILHESDGDDLGDQDHQPAPPHFYCKEGLPRSYWRPIGWDRISELVQEMHDNDTKPFDFKDDESDVPVAIVATPYWEWPVGPTWWCHLDAADPFVTAWFGSSRWLHPAISIALQEESRLISDRMKHLLYEVPVRVAGGLLFELLGQSAGDPLAEEDDIPIVLRAWQAQNFLVTALHVKGSASKINVLGILEVQELLAAGGANIPRSIHDVVAHLACRLARWDDRLFRKHIFGAADEVELMFMNRRNHEDLHLFTIILNQEITRLSTQVIRVKWALHAREEIVFELLQQLRGNATRALLEGVMNGTREMIEEQEAVRDRLFTIQDVMQSTVRAWLQDRSLAVTHNLGIFGGCGLVLSIITGLFGINVDGIPGSSGNPYAFLLFSVALFVLGVVLIGIGLLYLGLKKPIIEENVALRKLELQELVRMFEHEAESHAQVRKTLPHKDVPRTASKPYDSQLHIHEHLLSPCSRKEEADSPNRPPLKEAKSSCINLIANLSFKKGKIIHRSRSAPSVLFTDMGVDFHEPSEPYKSSTLIVRLSFIGVFLYVATGVAVYMTSGSFKGTTTFRPVDAVYFTMVTLCTIGFGDIVPDSTFTKIFTCGFILVGFGFIGFLLNGLVAYICDTQEAFLLSMMDENRYKNILSTYMVDEQKGRMRIRTKVCLALVVVIGCIAIGTVTVHYAEDLNWADSIYLSMTSVTTVGYGDYSFRTVIGRCFAIIWLLVGTLVVARALIYLTEYSIHKRNRKMAKWVLQKKITLSDLAAADLDNDGSISKSDFVIYKLKQMGKISEIDILQISKQFDSLEHGMYGKITLADLMETV 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01879 891 Pfam CorA-like Mg2+ transporter protein 333 466 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cca05g01879 891 PANTHER MAGNESIUM TRANSPORTER CORA FAMILY PROTEIN 10 524 - -
Cca05g01879 891 SUPERFAMILY Voltage-gated potassium channels 723 826 - -
Cca05g01879 891 ProSitePatterns EF-hand calcium-binding domain. 836 848 IPR018247 -
Cca05g01879 891 SUPERFAMILY Voltage-gated potassium channels 604 693 - -
Cca05g01879 891 MobiDBLite consensus disorder prediction 63 88 - -
Cca05g01879 891 Pfam Ion channel 738 806 IPR013099 -
Cca05g01879 891 Pfam Ion channel 616 692 IPR013099 -
Cca05g01879 891 PRINTS Two pore domain K+ channel signature 650 678 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cca05g01879 891 PRINTS Two pore domain K+ channel signature 770 779 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cca05g01879 891 PANTHER MAGNESIUM TRANSPORTER CORA-LIKE FAMILY PROTEIN 10 524 - -
Cca05g01879 891 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 418 467 IPR045863 -
Cca05g01879 891 Gene3D - 713 832 - -
Cca05g01879 891 Gene3D - 601 712 - -
Cca05g01879 891 Gene3D Magnesium transport protein CorA, transmembrane region 419 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01879 Cca-Chr5 38633095 38642833 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01879 573 889 Ion Channels AT4G18160 48.287 4.78e-96 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01879 - - gmx:100789115 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01879 05 38633095 38642833 Cca05g01879 05 38633095 38642833 ECH