Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01877 ATGGCAAATGAGAAAGACCATTATTATGACCCTTTTCATTACAACCACTCATCATCAAGCTTTCCATTCTTTAGGGACAACAACTCAACACAAAACTTTCAAGGGTTTGATCACAATAACCCTTCTCCTCACACTACTTTCACTGACTGCTTACATGGTTCCATGGATTACAACACTCTCTCAAGAGCCTTTGACTTGTCTTGCTCATCATCTGAAGTGATCTCCTCCATTGATGAAAACCCCAAGAAGAATCCTAGTGCAGGAGACTCAGCAGTAGGGAACCAATCGACACCCAATTCCTCAGTGTCTTCATCATCTAATGAAGCTGAAGCAGTGATAGAAGAAGACTCAACCAAAAGCCTGAAAAATAAGCAGCCAAAAGGGTGTGATGATGGAGATGAAAAGCCTAAGAAAGAGAACAAGGCCAAGAAGAAAGAGAAAAAGCCAAgagagcctcgctttgccttcttgactaaaagtgagatcgatcatcttgaagatggatacagatggagaaaatatggacagaaagcagtcaagaatagtccgtacccaaggagctattatagatgcaccagtcagaagtgtggtgtgaagaaaagggtggagaggtcattccaagatccttcaattgtgatcacaacatacgaagggcaacataaccatcATTGTCCAGCAACACTCCGAGGCAGTGCTGCAAGCATGTTGTCATCACCTTCCTTTTATGGTTCCTCTTATATGGGATCAACCTTACCCCAAGATTTTCTTTCTCAGTTTCTTCCAAGTTATAGCCAAAATGATCACCAAAATTCAGTCTTCCATCACCAAAACCTTTCCCATAATCTCCATCCACAGCCTCAACAGCAGCAGCAGCAATTCCAACTCTCTCGTGACTATGGTTTGCTGCAAGACCTACTACCATCATTCCAAGGCAAACAAGAGCCATGA 948 0.3259 MANEKDHYYDPFHYNHSSSSFPFFRDNNSTQNFQGFDHNNPSPHTTFTDCLHGSMDYNTLSRAFDLSCSSSEVISSIDENPKKNPSAGDSAVGNQSTPNSSVSSSSNEAEAVIEEDSTKSLKNKQPKGCDDGDEKPKKENKAKKKEKKPREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCGVKKRVERSFQDPSIVITTYEGQHNHHCPATLRGSAASMLSSPSFYGSSYMGSTLPQDFLSQFLPSYSQNDHQNSVFHHQNLSHNLHPQPQQQQQQFQLSRDYGLLQDLLPSFQGKQEP 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01877 315 PANTHER WRKY TRANSCRIPTION FACTOR 71-RELATED 3 309 - -
Cca05g01877 315 MobiDBLite consensus disorder prediction 112 155 - -
Cca05g01877 315 ProSiteProfiles WRKY domain profile. 160 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01877 315 MobiDBLite consensus disorder prediction 76 155 - -
Cca05g01877 315 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 3 309 IPR044810 GO:0003700
Cca05g01877 315 SUPERFAMILY WRKY DNA-binding domain 158 225 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g01877 315 Pfam WRKY DNA -binding domain 166 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01877 315 MobiDBLite consensus disorder prediction 76 111 - -
Cca05g01877 315 Gene3D WRKY domain 149 226 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g01877 315 SMART WRKY_cls 165 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01877 Cca-Chr5 38614865 38617512 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01877 40 315 WRKY Transcription Factor Family AT4G18170 44.667 3.78e-60 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca05g01877 WRKY 1.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01877 - - gmx:100806016 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01877 05 38614865 38617512 Cca05g01877 05 38614865 38617512 ECH