Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca05g01877 | ATGGCAAATGAGAAAGACCATTATTATGACCCTTTTCATTACAACCACTCATCATCAAGCTTTCCATTCTTTAGGGACAACAACTCAACACAAAACTTTCAAGGGTTTGATCACAATAACCCTTCTCCTCACACTACTTTCACTGACTGCTTACATGGTTCCATGGATTACAACACTCTCTCAAGAGCCTTTGACTTGTCTTGCTCATCATCTGAAGTGATCTCCTCCATTGATGAAAACCCCAAGAAGAATCCTAGTGCAGGAGACTCAGCAGTAGGGAACCAATCGACACCCAATTCCTCAGTGTCTTCATCATCTAATGAAGCTGAAGCAGTGATAGAAGAAGACTCAACCAAAAGCCTGAAAAATAAGCAGCCAAAAGGGTGTGATGATGGAGATGAAAAGCCTAAGAAAGAGAACAAGGCCAAGAAGAAAGAGAAAAAGCCAAgagagcctcgctttgccttcttgactaaaagtgagatcgatcatcttgaagatggatacagatggagaaaatatggacagaaagcagtcaagaatagtccgtacccaaggagctattatagatgcaccagtcagaagtgtggtgtgaagaaaagggtggagaggtcattccaagatccttcaattgtgatcacaacatacgaagggcaacataaccatcATTGTCCAGCAACACTCCGAGGCAGTGCTGCAAGCATGTTGTCATCACCTTCCTTTTATGGTTCCTCTTATATGGGATCAACCTTACCCCAAGATTTTCTTTCTCAGTTTCTTCCAAGTTATAGCCAAAATGATCACCAAAATTCAGTCTTCCATCACCAAAACCTTTCCCATAATCTCCATCCACAGCCTCAACAGCAGCAGCAGCAATTCCAACTCTCTCGTGACTATGGTTTGCTGCAAGACCTACTACCATCATTCCAAGGCAAACAAGAGCCATGA | 948 | 0.3259 | MANEKDHYYDPFHYNHSSSSFPFFRDNNSTQNFQGFDHNNPSPHTTFTDCLHGSMDYNTLSRAFDLSCSSSEVISSIDENPKKNPSAGDSAVGNQSTPNSSVSSSSNEAEAVIEEDSTKSLKNKQPKGCDDGDEKPKKENKAKKKEKKPREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCGVKKRVERSFQDPSIVITTYEGQHNHHCPATLRGSAASMLSSPSFYGSSYMGSTLPQDFLSQFLPSYSQNDHQNSVFHHQNLSHNLHPQPQQQQQQFQLSRDYGLLQDLLPSFQGKQEP | 315 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca05g01877 | 315 | PANTHER | WRKY TRANSCRIPTION FACTOR 71-RELATED | 3 | 309 | - | - | |
Cca05g01877 | 315 | MobiDBLite | consensus disorder prediction | 112 | 155 | - | - | |
Cca05g01877 | 315 | ProSiteProfiles | WRKY domain profile. | 160 | 225 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cca05g01877 | 315 | MobiDBLite | consensus disorder prediction | 76 | 155 | - | - | |
Cca05g01877 | 315 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 3 | 309 | IPR044810 | GO:0003700 | |
Cca05g01877 | 315 | SUPERFAMILY | WRKY DNA-binding domain | 158 | 225 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cca05g01877 | 315 | Pfam | WRKY DNA -binding domain | 166 | 222 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cca05g01877 | 315 | MobiDBLite | consensus disorder prediction | 76 | 111 | - | - | |
Cca05g01877 | 315 | Gene3D | WRKY domain | 149 | 226 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cca05g01877 | 315 | SMART | WRKY_cls | 165 | 224 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca05g01877 | Cca-Chr5 | 38614865 | 38617512 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca05g01877 | 40 | 315 | WRKY Transcription Factor Family | AT4G18170 | 44.667 | 3.78e-60 | 193 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Cca05g01877 | WRKY | 1.4e-25 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca05g01877 | - | - | gmx:100806016 | 488.804 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca05g01877 | 05 | 38614865 | 38617512 | Cca05g01877 | 05 | 38614865 | 38617512 | ECH |