Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01876 ATGTCATCCAACAGTTCTTTGAATGTTGAATTGTCAAAGAAGACGTCTTTTTTGGGTTTGAAACGATGGGTTTTGCTAGGGATAGGTGTTGGTGCATTTATAGTGCTGATTCTTTGTATATTATCCGTATGGGTGATGTTTCGGAGAAAGTCTAGGAGATCTCTGGAGAAGCATTCTATATCCCAAATACCGAATGTCTCAAAAGATATTGATGTTGACAAAGTTGGAGTGCAGAGTTCTCATGTTCAACCAGAAAATGTGCTTATTCCTGTTCATGACAAGGCAAGTGATTACAATTCAGATAACATGTCGCTTCATTTGGGAAAGAGAAAATCCGGTGATCCTGATAATATCAGTCAGTGCAGCTCAATTTATCATCATGAGAGAGGACTTAGTTCATTGTCGGCGGAAGAAGGAAGTTCTGGGAATGCTAAGAAGCAATCTATATCATCTCATGGAGCGCTGGCAACTGCCTCTCCTTTAGTTGGCTTGCCAGAGTTTTCTCATCTTGGGTGGGGCCACTGGTTTACACTTAGGGATCTGGAAATGGCAACCAATCGTTTCTCAACTGAGAACATTATTGGTGAGGGTGGATATGGGATTGTGTACAAGGGCAGACTGGTTAATGAAACTGAGGTTGCAGTGAAGAAGCTTCTTAACAACTTGGGACAAGCTGAGAAAGAATTCAGGGTTGAAGTCGAGGCTATAGGACATGTTAGACATAAGCATCTTGTGCGCCTTCTTGGATATTGTGTAGAAGGAGTTCACAGGCTGCTTGTGTACGAATATGTGAACAATGGTAACTTAGAACAATGGTTACATGGGGACATGCACCAACATGGGGCACTTACCTGGGAGGCCCGAATGAAAGTTATACTTGGCACAGCCAAAGCGCTTGCTTATTTACATGAAGCAATTGAACCAAAAGTTATTCACCGAGATATAAAGTCTAGCAACATATTGATTGATGATGAATTCAATGCAAAGGTTTCTGATTTTGGTCTGGCCAAACTTCTGGATTCAGGAGAAAGTCACATAACCACTAGAGTAATGGGAACATTTGGTTATGTGGCACCGGAATATGCTAACAGTGGTTTGTTAAATGAGAAGAGTGACATTTACAGCTTTGGCGTCCTCTTGCTTGAAGCAGTAACTGGAAGGGACCCTGTAGACTATTCACGTCCTGCTACCGAGGTTAATCTAGTTGAATGGCTCAAAATGATGGTGGGGACAAGGAGGGCTGAAGAAGTAGTGGACTCAAGCCTTGAAGTTAAACCACCAGCACGTGCTTTGAAGCGTGCTCTCTTGGTTGCACTTAAGTGTATTGATCCTGATGCAGACAAGAGGCCTAAAATGAGTCAAGTTGTGAGGATGCTTGAAGCCGATGAACATCCATTTCGAGAGGATAGAAGGAATAGAAAGAGTGGCACTGCCAGCATGGAAATTGAAACAGTGAAGGATGTTTCTGGTCCATCTGATGCTGAAAAGATGGGGCATATATCTGAAAGCCACGTTGAAGGATAG 1524 0.4265 MSSNSSLNVELSKKTSFLGLKRWVLLGIGVGAFIVLILCILSVWVMFRRKSRRSLEKHSISQIPNVSKDIDVDKVGVQSSHVQPENVLIPVHDKASDYNSDNMSLHLGKRKSGDPDNISQCSSIYHHERGLSSLSAEEGSSGNAKKQSISSHGALATASPLVGLPEFSHLGWGHWFTLRDLEMATNRFSTENIIGEGGYGIVYKGRLVNETEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKHLVRLLGYCVEGVHRLLVYEYVNNGNLEQWLHGDMHQHGALTWEARMKVILGTAKALAYLHEAIEPKVIHRDIKSSNILIDDEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANSGLLNEKSDIYSFGVLLLEAVTGRDPVDYSRPATEVNLVEWLKMMVGTRRAEEVVDSSLEVKPPARALKRALLVALKCIDPDADKRPKMSQVVRMLEADEHPFREDRRNRKSGTASMEIETVKDVSGPSDAEKMGHISESHVEG 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01876 507 PANTHER RECEPTOR-LIKE KINASE PLANT 2 506 - -
Cca05g01876 507 PANTHER OS01G0323000 PROTEIN 2 506 - -
Cca05g01876 507 Coils Coil 208 228 - -
Cca05g01876 507 Pfam Protein kinase domain 189 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01876 507 MobiDBLite consensus disorder prediction 463 477 - -
Cca05g01876 507 MobiDBLite consensus disorder prediction 463 507 - -
Cca05g01876 507 MobiDBLite consensus disorder prediction 488 507 - -
Cca05g01876 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Cca05g01876 507 ProSitePatterns Protein kinases ATP-binding region signature. 194 217 IPR017441 GO:0005524
Cca05g01876 507 Gene3D Transferase(Phosphotransferase) domain 1 264 476 - -
Cca05g01876 507 SUPERFAMILY Protein kinase-like (PK-like) 172 460 IPR011009 -
Cca05g01876 507 SMART serkin_6 188 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01876 507 CDD STKc_IRAK 194 460 - -
Cca05g01876 507 Gene3D Phosphorylase Kinase; domain 1 169 263 - -
Cca05g01876 507 ProSiteProfiles Protein kinase domain profile. 188 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01876 Cca-Chr5 38584826 38590874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01876 19 462 Trihelix Transcription Factor Family AT1G70460 39.866 3.67e-95 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Cca05g01876 Pkinase 2.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01876 - - gmx:100778444 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01876 05 38584826 38590874 Cca05g01876 05 38584826 38590874 ECH
Cca09g00988 09 29647423 29651194 Cca05g01876 05 38584826 38590874 PCT