Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01868 ATGGTTTTTAAGGTTTCTCTCATTTTGATTCTCCTTGTGATATGCTCTTGTGACGTGGAAGCCGTTTATGGGAATCACAATGACAACAGTTTCAACAAAAATGGATCTTCTCTTGCTGCCATAAAGTTTCCTCATCATCCAAGTTTCAATGATGTCTCTTCTTCAGGGGACACTGATTGTAGCCTCTCAAATTCTGAGCAACTTCCCACCATGACATCAGGTGAAGAAAAGGGTGATGCTTTTTCAGCATCAAAACCGAACAAGCATTTGGTGAAATTCCACTTGAAACACAGGTCAGGGAGCAAAGATTCTGAGCCTAAAAAGTCTCTTATTGTGAGGGATTTGACCAGAATTCAGAACCTTCACAGAAGGGTCATAGAAAAGAAGAACCAAAACACAGTTTCAAGGCTGCAAAAATCACAGGATCAACCAAAGAAGCAGTCCTACAAGCCGGCGGTTGCTCCGGCGGTTTCGCCGGCAAGTGGGGTCTCCGGGCAGCTTGTGGCAACCTTGGAATCTGGGGTGAGTCTTGGCTCTGGTGAGTACTTAATGGATGTGTTTGTGGGAACACCTCCGAAGCATTTTTCTCTGATACTTGATACTGGTAGTGACCTAAATTGGATTCAATGTGTTCCTTGCATTGCATGTTTTGAGCAAAGTGGGCCATATTATGATCCTAAAGATTCTAGCTCTTTTAGGAATATAAGTTGTCAGGATCCAAGGTGCCAATTGGTTTCATCCCCGGATCCACCTAAGCCTTGCAAGGGTGAGAATCAGAGTTGTCCCTACTTTTATTGGTATGGGGATGGTTCAAACACAACTGGGGATTTTGCATTGGAGACTTTTACTGTTAATCTAACCACTCCTTATGGGAAGTCAGAATTGAAGCATGTGGAGAATGTGATGTTTGGATGTGGTCATTGGAATAGAGGCCTTTTTCACGGTGCTGCTGGTTTGCTAGGATTGGGGAGAGGACCACTGTCATTTGCTTCTCAGATGCAATCTCTCTATGGTCATTCCTTTTCCTATTGTCTTGTGGATAGAAACAGCAATGCAAGTGTCAGTAGCAAATTGATCTTTGGTGAGGACAAGGAACTTCTCAGCCACCCCAATTTGAATTTCACTTCTTTTGCTGGTGGCAAAGAGAATCCAGTTGATACATTTTACTATGTGGAGATAAAATCTGTTATGGTTGATGATGAGGTGCTGAAGATACCTGAGGAGACTTGGCATTTGTCAGCAGAAGGTGCTGGTGGAACCATAATTGATTCTGGCACCACATTAACATATTTTGCTGAGCCTGCTTATGAGATCATCAAGGAGGCTTTTGTGAAGAAAATTAAGGGCTATGCACTTGTTGAAGGCCTTCCTCCTCTAAAGCCATGTTACAATGTGTCTGGAATTGAAAAGATGGAGCTACCTGACTTTGGGATCTCGTTTGCTGATGGGGCAGTGTGGAATTTTCCGGTGGAAAATTACTTCATCCAGATTGATCCTGATGTTGTTTGTTTGGCTATTTTGGGGACTCCTAGATCTGCTCTTTCAATAATTGGAAACTATCAGCAGCAGAATTTTCACATACTGTATGACATGAAGAAATCTAGACTTGGGTATGCACCCATGAAGTGTGCTGATTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCTTAACCGATGAACATCCCAAGATCTACCGCATGAAACTATGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGGTATTTCTTGAGAAAGTTAAAGAAGGTCAAGAAAAGCAACGGGCAAGTGCTAGCCATCAATGAGATTTTTGAGAAAAATCCTACTAAGATTAAGAACTACGGAATTTGGCTGCGTTATCAGAGTCGTACTGGTTATCACAATATGTACAAGGAATACCGAGATACTACTCTAAATGGTGCTATTGAATATTTGTACAATGAAATGGCATCTCGTCATAGGGTGAGGCAGCCATGCATTCAGATAATTAAGACTGCCACAATCCCAGCTAAGCTGTGCAAAAGGGAGAGCACCAAGCAGTTCCACAATTCTAAAATCAAGTTCCCATTGGTGTTCAAGAAGATTAGGCCCCCAACTAGGAAGCTGAAGACAACATACAAGGCTTCTAGGCCAAACCTGTTTAAGTGA 2157 0.4288 MVFKVSLILILLVICSCDVEAVYGNHNDNSFNKNGSSLAAIKFPHHPSFNDVSSSGDTDCSLSNSEQLPTMTSGEEKGDAFSASKPNKHLVKFHLKHRSGSKDSEPKKSLIVRDLTRIQNLHRRVIEKKNQNTVSRLQKSQDQPKKQSYKPAVAPAVSPASGVSGQLVATLESGVSLGSGEYLMDVFVGTPPKHFSLILDTGSDLNWIQCVPCIACFEQSGPYYDPKDSSSFRNISCQDPRCQLVSSPDPPKPCKGENQSCPYFYWYGDGSNTTGDFALETFTVNLTTPYGKSELKHVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFASQMQSLYGHSFSYCLVDRNSNASVSSKLIFGEDKELLSHPNLNFTSFAGGKENPVDTFYYVEIKSVMVDDEVLKIPEETWHLSAEGAGGTIIDSGTTLTYFAEPAYEIIKEAFVKKIKGYALVEGLPPLKPCYNVSGIEKMELPDFGISFADGAVWNFPVENYFIQIDPDVVCLAILGTPRSALSIIGNYQQQNFHILYDMKKSRLGYAPMKCADFHQYQVVGRALPTLTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAIEYLYNEMASRHRVRQPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKIRPPTRKLKTTYKASRPNLFK 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01868 718 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 197 208 IPR001969 GO:0004190|GO:0006508
Cca05g01868 718 Pfam Xylanase inhibitor N-terminal 182 361 IPR032861 -
Cca05g01868 718 ProSiteProfiles Peptidase family A1 domain profile. 182 539 IPR033121 -
Cca05g01868 718 Gene3D Acid Proteases 363 546 IPR021109 -
Cca05g01868 718 CDD pepsin_A_like_plant 181 543 IPR034161 -
Cca05g01868 718 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Cca05g01868 718 Gene3D Acid Proteases 162 362 IPR021109 -
Cca05g01868 718 MobiDBLite consensus disorder prediction 131 147 - -
Cca05g01868 718 SUPERFAMILY RplX-like 611 686 - -
Cca05g01868 718 Pfam Xylanase inhibitor C-terminal 389 539 IPR032799 -
Cca05g01868 718 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 8 545 - -
Cca05g01868 718 SUPERFAMILY Acid proteases 174 546 IPR021109 -
Cca05g01868 718 Gene3D - 612 687 - -
Cca05g01868 718 PRINTS Pepsin (A1) aspartic protease family signature 188 208 IPR001461 GO:0004190|GO:0006508
Cca05g01868 718 PRINTS Pepsin (A1) aspartic protease family signature 515 530 IPR001461 GO:0004190|GO:0006508
Cca05g01868 718 PRINTS Pepsin (A1) aspartic protease family signature 420 431 IPR001461 GO:0004190|GO:0006508
Cca05g01868 718 MobiDBLite consensus disorder prediction 52 72 - -
Cca05g01868 718 MobiDBLite consensus disorder prediction 127 159 - -
Cca05g01868 718 Hamap 50S ribosomal protein L18Ae [rpl18a]. 546 609 IPR028877 -
Cca05g01868 718 Gene3D - 547 611 - -
Cca05g01868 718 PANTHER ASPARTYL PROTEASES 8 545 IPR001461 GO:0004190|GO:0006508
Cca05g01868 718 MobiDBLite consensus disorder prediction 52 82 - -
Cca05g01868 718 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 547 668 IPR023573 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01868 Cca-Chr5 38496974 38511078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01868 536 717 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 85.165 7.90e-110 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01868 K22683 - zju:107416111 1089.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01868 05 38496974 38511078 Cca05g01868 05 38496974 38511078 ECH