Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01865 ATGGAACAAGTTCGCAAAGGGTACGTTCCTGTGTTAGTGGGCAAAGGGAAATCTACAGAGAAGATATGGGTATCCATCGAAGCAATTCAGCATCCAACCGTTGTTCAGTTGCTTCATCAATCTGCAGATGAATTGGGATACCAGCAAGGTGTGCTCAGAATCATATATGATGTCAACATCTTCAAAGACATAATTCACAATGCATCCAACAACTATTTGTCAACTTACATATGTATTTGA 240 0.3958 MEQVRKGYVPVLVGKGKSTEKIWVSIEAIQHPTVVQLLHQSADELGYQQGVLRIIYDVNIFKDIIHNASNNYLSTYICI 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01865 79 Pfam Auxin responsive protein 3 65 IPR003676 GO:0009733
Cca05g01865 79 PANTHER SAUR-LIKE AUXIN-RESPONSIVE FAMILY PROTEIN 2 70 - -
Cca05g01865 79 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 2 70 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01865 Cca-Chr5 38462754 38462993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01865 4 78 Calmodulin-binding Proteins AT4G31320 36.250 5.38e-08 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01865 - K14488 pvu:PHAVU_008G194200g 92.4337