Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01862 ATGGAAGTGACCAAGTTACATAGCTCTGATGATGATGACAAGAAGGAAGAAGATGAAGTTGTGCTACCTGGCTTTAGATTCCATCCCACAGATGAAGAGCTTGTTGGGTTTTATCTGAGACGAAAGGTAGAGAAGAAGCCTCTAAGAATTGAACTCATCAAACAGATTGACATCTACAAATACGATCCATGGGATCTTCCTAAAGCGAGTTCAGTGGGGGAGAAGGAATGGTACTTCTTCTGCATAAGAGGGAGAAAATACAGGAACAGCATAAGGCCTAATAGGGTGACAGGGTCTGGATTTTGGAAAGCCACAGGGATTGATAAGCCAATATACTGTGTTAAAGAACCCCATGACTGCATTGGCCTAAAGAAATCATTGGTTTATTACAGAGGAAGTGCTGGAAAAGGCACCAAAACTGATTGGATGATGCACGAGTTTCGTCTCCCACCCAATGGAAAAACTATCAATAATCCACAACCTAATCATCTTCAAGAAGCTGAAGTGTGGACGCTATGCAGAATATTCAAACGAGTCCCATCTTTTAAGAGGTACACACCAAATTTGAAAGACTCAGCAATGACGAAGGCAATAATAAACCCTACAAACTCTTCAATTTCCAAAACATGCAGCTTAGAATCTGACAACGGCAAGCCATACTTGACTTTCACAAACTCACCACTCATTCAACAAAACCAAACCAAAGCACATGTTGACGAACGTAGCCACTTGTTTCTAGCTCAGCCTCCAACATCCTTCTCTTACTCCACTTTTTGGAATCCTCAGAGTGCCGATTTTGGTAACGAGAATTGGGATGATCTTACATCTGTCGTTCAGTTTGCCATTGATCCATCCAGGGTTTCTGATTGTAAAGAATTTAATAGATTTTAA 891 0.4108 MEVTKLHSSDDDDKKEEDEVVLPGFRFHPTDEELVGFYLRRKVEKKPLRIELIKQIDIYKYDPWDLPKASSVGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYCVKEPHDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNGKTINNPQPNHLQEAEVWTLCRIFKRVPSFKRYTPNLKDSAMTKAIINPTNSSISKTCSLESDNGKPYLTFTNSPLIQQNQTKAHVDERSHLFLAQPPTSFSYSTFWNPQSADFGNENWDDLTSVVQFAIDPSRVSDCKEFNRF 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01862 296 SUPERFAMILY NAC domain 20 177 IPR036093 GO:0003677|GO:0006355
Cca05g01862 296 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 295 - -
Cca05g01862 296 Pfam No apical meristem (NAM) protein 23 149 IPR003441 GO:0003677|GO:0006355
Cca05g01862 296 ProSiteProfiles NAC domain profile. 21 178 IPR003441 GO:0003677|GO:0006355
Cca05g01862 296 Gene3D NAC domain 30 181 IPR036093 GO:0003677|GO:0006355
Cca05g01862 296 PANTHER - 3 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01862 Cca-Chr5 38418561 38422819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01862 3 179 NAC Transcription Factor Family AT5G39820 57.292 3.88e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca05g01862 NAM 6.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01862 - - gmx:100784323 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01862 05 38418561 38422819 Cca05g01862 05 38418561 38422819 ECH