Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01860 ATGGTAGTGAAGGTATACGGTCCTCACTGTGCTTCCACTAAACGGGTGCTGGTTTGTCTGGTTGAGAAGGAAATCGAGTTTGAGGTTGTCCCTGTTGATGTAAGCAAAGGGGAACACAAGGATCCTGAGTACCTCAAGTTACAGCCCTTTGGAGTTGTTCCTGTCATTAAAGATGGAGACTATACCTTATATGAATCTCGTGCTATAATGAGGTATTATGCAGAAAAATACAGGTCTCAAGGAGTTGAGTTGCTGGGGAATACAATAGAAGAGAGGGGTCTTGTGGAACAGTGGCTAGAAGTTGAAGCACACAACTTCCACCCACCAGCCTACGACTTGTGTATTCATGTTTTGTTTGGTCCAATGTTTGGTGTGACTTCAGATCCAAAGGTGATTGAGGAGAGTGAGGCAAAGCTGGTGCAGGTGTTGAACATCTATGAGGAGAGGCTCTCAAAGAGTAAGTATTTGGCTGGGGATTTCTTCAGCCTTGCTGACATTAGCCACATTCCATTTCTTGATTATATTGTGAACAATATGGGGAAAGGGTATTTAGTAAAGGAGAGGAAGAATGTGAGTGCTTGGTGGGATGACATAAGCAATAGACCATCATGGAAGAAGGTTCTCCAGTCGTACAGAGCTCCAATCTAG 648 0.4398 MVVKVYGPHCASTKRVLVCLVEKEIEFEVVPVDVSKGEHKDPEYLKLQPFGVVPVIKDGDYTLYESRAIMRYYAEKYRSQGVELLGNTIEERGLVEQWLEVEAHNFHPPAYDLCIHVLFGPMFGVTSDPKVIEESEAKLVQVLNIYEERLSKSKYLAGDFFSLADISHIPFLDYIVNNMGKGYLVKERKNVSAWWDDISNRPSWKKVLQSYRAPI 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01860 215 PANTHER GLUTATHIONE S-TRANSFERASE RHO 2 215 - -
Cca05g01860 215 CDD GST_N_Phi 2 76 - -
Cca05g01860 215 SUPERFAMILY Thioredoxin-like 6 81 IPR036249 -
Cca05g01860 215 SUPERFAMILY GST C-terminal domain-like 83 211 IPR036282 -
Cca05g01860 215 SFLD Glutathione Transferase (cytosolic) 4 201 IPR040079 -
Cca05g01860 215 Pfam Glutathione S-transferase, C-terminal domain 115 202 IPR004046 -
Cca05g01860 215 CDD GST_C_Phi 90 208 IPR034347 -
Cca05g01860 215 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 215 IPR010987 -
Cca05g01860 215 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 2 215 - -
Cca05g01860 215 Gene3D Glutaredoxin 1 85 - -
Cca05g01860 215 Gene3D - 86 208 - -
Cca05g01860 215 Pfam Glutathione S-transferase, N-terminal domain 4 74 IPR004045 -
Cca05g01860 215 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 81 IPR004045 -
Cca05g01860 215 SFLD Main (cytGST) 4 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01860 Cca-Chr5 38409071 38411380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01860 1 215 Glutathione S-transferase Gene Family AT2G30870 58.605 2.99e-96 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01860 K00799 - gmx:547951 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01860 05 38409071 38411380 Cca05g01860 05 38409071 38411380 ECH