Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01858 ATGGTTTCGGGAGAAGGATTCATTGTGAGTGTGAGCAAGGTGGAGGTGGTGGCACCAGAGCTTCCAATGCAAGAGCACTGGCTCCCACTATCTAACCTTGATCTTCTCATTCCCCCACTCGACGTTAGTGTCTTCTTTTGCTACAAAAAACCTTCGTCAATGTCCTTTGCTTCCATGGTAGGGTCCCTCAAAAATGCCTTGGCTCAGGCTCTAGTTTACTACTACCCTCTTGCGGGTGAAGTGGTGACCAACTCCACGGGTGAGCCTGAACTGTTTTGCAGTAACCGCGGTGTAGATTTTGTCGAAGCTGTGGCTGACGTGGAACTACACCGTCTCAACATGTACAACCCAGATGACACCATTGAAGGGAAGCTTGTGCCCAAAAAGAAGCATGGTGTCCTCGCTGTTCAGGCAACTGGTCTCAAGTGTGGGAGTTTAGTAGTGGCATGTGCTCTGGACCATCGCATAGGTGACGCCTATTCTGCGAACATGTTCCTCGTATCATGGGCCGAGATAGCCCAGCCCAACAAGCCCATAATCTCGGCCCATCCTTGTTTCCGACGGTCCCTTCTCTTCCCACGACGCCCACCTTCCATTGACCACCCTTCACTTCATGACATGTACGCTCCCATGGCTGCACTACCTCCTCCTAAGTTCGGAGTTCAATCTGAACCACTCATTAGTCGCATATACTACGTCACAAGCGACCACCTGAACCGCATGCAGGCGCTCGCTAGCTCAAACGGTGTGAAGCGCACAAGGCTCCAGTCTTTCTCCGCCTTCTTGTGGAAGACGGTtgctgaagctgctgatgctgctgctggtgttgatgGTAAGAGAAAGGTTGTTGCAAAGATGGGTGTTGTGGTTGATGGAAGGAAGAGACTGAGCAATGGCGACAAGAACATGGGTTCGTATTTCGGTAACGTGCTTTCAATCCCCTACGGTGGGAAACAGGTGGAGGAGCTTGTTGAAAAGCCGTTGAGTTGGGTGGCGGAGAAAGTTCACGAGTTTTTGGAGATGGGTGTGACAGAGGAGCATTTTTTGGGACTTGTTGATTGGGTGGAGGCACACCGACCTGTCCCTGGGGTTGCTAGGATCTATTGTGGCCATGAAAATGAAGAGGGACCTCGTTTTGTGGTTTCTTCTGGACAAAGGTTCCCTGTGTCAAAGGTTGACTTTGGGTGGGGGAAGCCTGTGTTTGCATCGTACCATTTTCCATGGGGTGGAGATGCTGGTTACGTCATGCCAATGCCTTCTCCTATTGGGAATGGTGATTGGTTAGTTTATATGCACCTTTTTAAGGGTCTTTTGAGTTTCATGGAGTCTAAGGCTCCTCAGATTTTTAAACCATTCTCTTGGGATTACGTCCTTAGTCGTCATTGA 1386 0.487 MVSGEGFIVSVSKVEVVAPELPMQEHWLPLSNLDLLIPPLDVSVFFCYKKPSSMSFASMVGSLKNALAQALVYYYPLAGEVVTNSTGEPELFCSNRGVDFVEAVADVELHRLNMYNPDDTIEGKLVPKKKHGVLAVQATGLKCGSLVVACALDHRIGDAYSANMFLVSWAEIAQPNKPIISAHPCFRRSLLFPRRPPSIDHPSLHDMYAPMAALPPPKFGVQSEPLISRIYYVTSDHLNRMQALASSNGVKRTRLQSFSAFLWKTVAEAADAAAGVDGKRKVVAKMGVVVDGRKRLSNGDKNMGSYFGNVLSIPYGGKQVEELVEKPLSWVAEKVHEFLEMGVTEEHFLGLVDWVEAHRPVPGVARIYCGHENEEGPRFVVSSGQRFPVSKVDFGWGKPVFASYHFPWGGDAGYVMPMPSPIGNGDWLVYMHLFKGLLSFMESKAPQIFKPFSWDYVLSRH 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01858 461 Pfam Transferase family 9 444 - -
Cca05g01858 461 Gene3D - 212 443 IPR023213 -
Cca05g01858 461 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 7 454 - -
Cca05g01858 461 Gene3D - 8 210 IPR023213 -
Cca05g01858 461 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 7 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01858 Cca-Chr5 38388644 38390313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01858 18 438 Monolignol Biosynthesis Gene Families AT5G48930 27.149 6.04e-36 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01858 - - gmx:100809201 740.339