Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01856 ATGGATAACTCAAATGACTCATCATCATCCTTGAGTTTTGTATCATCTCACCTTTCAAATGGTTCTAGTAATCACAACGTGTCCTCCTCCACCAGCAATGAACATGGGGCAAATATTGAGATTTTGAGTCTGAGTAAGCTCAGTGGAAGTCTTGAGAAGCTATTGATTGATGCTGAGTATGATTATAGTGATGCCGAGATTCTTGTTGAAGACATCTCTGTGGGTATTCATCGCGGTATATTGGCTTCACGTAGTCCATTTTTTCATGAGCTTTTTAAGAAAGGAACTGATGAATCAGGGAAGGAAGGGAAGCCAAGGTATCTCATGTCAGATTTGGTGCCCTATGGCAGAGTTGGACATGAAGCTTTCCAAGTATTCTTGTACTATTTGTACACTGGAAGGCTAAAGGCTTCACCAACAGAAGTCACAACATGTGTTGATGAAACATGTATCCATGATGCATGTCGCCCTGCTATCAATTATGCTTTGGAGCTCATGTACGCTTCTGCCACTTTTCAGATGAAAGAACTGGTTTTACTTTTTCAGCGGCATCTCCTAAATTTTGTTGAGAAGGCTCTTGTGGAAGATGTCATTCCTATTCTTATGGCTGCCTTCAACTGCCAACTGGACCAGCTTCTCTCTCGTTGCATTCAGAGAGTTGCAAGGTCTGACTTTGACAATACATCTTTGGAGAAAGAGCTCCCTCATGAAGTTGTGACTGAAATCAAATCACTCAGACCTCAATCTCAGCCAGAATCCACACCTGATGCAATGGAAGTGGTGCCTTTGAGTGATAAGAGTGTCAAAAGAATCCACAAGGCATTGGACTCTGATGATGTTGAACTATTGAAGCTTCTTCTAAGTGAGTCTAGTGTCACTCTAGATGATGCCTTTGCCCTGCACTATGCATGTGCCTATAGTGATTCTAAGGTTGTTCAAGAAGTTCTTGGTCTAGGCTTGGCTGATATTCTCCTTAGAAACTCCAGAGGATACACAGTTCTTCATGTGGCTGCGAGGCGAAAGGATCCGTCCATCTTGGTAGCACTACTTAAAAGAGGGGCTTGTGCATCAGATACCACTCCAGATGGACAAACTGCTCTTGCAATTTGTCAGAGGCTGACAAGGCGCAAAGATTATCATCAGAAAACAGAGAAGGGTAAGGAATCTAACAAGGACAGGCTTTGTGTTGATGTGCTGGAGAGGGAGATGAGAAGAAGTTCAAGGGTTGTGAATTTGTCTGTTTCATCACAGTTAACAGCTGATGATTTGCACATGAGACTGGATTACCTTGAAGATAGAGTTACATTTGCTAGGCTGTTGTTTCCTGCTTAG 1332 0.4264 MDNSNDSSSSLSFVSSHLSNGSSNHNVSSSTSNEHGANIEILSLSKLSGSLEKLLIDAEYDYSDAEILVEDISVGIHRGILASRSPFFHELFKKGTDESGKEGKPRYLMSDLVPYGRVGHEAFQVFLYYLYTGRLKASPTEVTTCVDETCIHDACRPAINYALELMYASATFQMKELVLLFQRHLLNFVEKALVEDVIPILMAAFNCQLDQLLSRCIQRVARSDFDNTSLEKELPHEVVTEIKSLRPQSQPESTPDAMEVVPLSDKSVKRIHKALDSDDVELLKLLLSESSVTLDDAFALHYACAYSDSKVVQEVLGLGLADILLRNSRGYTVLHVAARRKDPSILVALLKRGACASDTTPDGQTALAICQRLTRRKDYHQKTEKGKESNKDRLCVDVLEREMRRSSRVVNLSVSSQLTADDLHMRLDYLEDRVTFARLLFPA 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01856 443 Gene3D - 263 403 IPR036770 -
Cca05g01856 443 SUPERFAMILY POZ domain 60 187 IPR011333 -
Cca05g01856 443 Pfam NPR1/NIM1 like defence protein C terminal 371 443 IPR021094 -
Cca05g01856 443 PANTHER REGULATORY PROTEIN NPR3 1 443 IPR044292 GO:0009862|GO:2000022|GO:2000031
Cca05g01856 443 SMART BTB_4 63 189 IPR000210 GO:0005515
Cca05g01856 443 ProSiteProfiles Ankyrin repeat profile. 329 354 IPR002110 GO:0005515
Cca05g01856 443 Pfam Ankyrin repeats (many copies) 321 369 IPR002110 GO:0005515
Cca05g01856 443 SMART ANK_2a 295 325 IPR002110 GO:0005515
Cca05g01856 443 SMART ANK_2a 329 358 IPR002110 GO:0005515
Cca05g01856 443 SMART ANK_2a 266 294 IPR002110 GO:0005515
Cca05g01856 443 PANTHER REGULATORY PROTEIN, PUTATIVE-RELATED 1 443 - -
Cca05g01856 443 Gene3D Potassium Channel Kv1.1; Chain A 28 221 IPR011333 -
Cca05g01856 443 ProSiteProfiles BTB domain profile. 63 139 IPR000210 GO:0005515
Cca05g01856 443 SUPERFAMILY Ankyrin repeat 270 372 IPR036770 -
Cca05g01856 443 Pfam BTB/POZ domain 60 147 IPR000210 GO:0005515
Cca05g01856 443 Pfam Domain of unknown function (DUF3420) 224 272 IPR024228 -
Cca05g01856 443 ProSiteProfiles Ankyrin repeat region circular profile. 329 354 - -
Cca05g01856 443 CDD BTB_POZ_NPR_plant 52 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01856 Cca-Chr5 38364527 38370374 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca05g01856 BTB 3.5e-11 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01856 K14508 - gmx:100814739 699.508