Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01853 ATGAAAAGTTCTGAGAGAAGTAGCAGTGCCAGGCAATACAAAAAATCCCAACTTCCACGCCTGCGATGGACTCCCCAACTCCATCAACACTTTGTTGAAGCTATTCAAAGTCTTGGTGGAAAACACAAGGCAACTCCGAAGCGAATTTTGCAGCAGATGCGTGTGAAAGGACTCAGGATCGCTCACATCAAAAGCCATCTTCAGATGTACAGAAACATGAAGGGGCATGCCATTATTGCATCAGAGAATCAGTTGCTGGAAGGATATGCAAACGATTTCAAAACCCAAAGCAGGAACAAAAGTGAGCTTTTACAAACCAGTGAAGAAACTGATTATGACCTAAACCAGGAACCCCGGTCAAGTGCATGGTTGGTTAGTGATGATGTGTCAAATGAAGAAGAAGATTGTAGGCTAATTAAATTTCCTGGTCTCCCATTCACGCCTCTAATTTCGATGATGCATAGACAACAACAGATAATGCGTTTTTCCTCATCAACTGAACCTCCTAATCATTCCCTTCAATCAACTTCTTTTGGAAACACTTATATAAACTTAGACCTAACAATCTGA 570 0.414 MKSSERSSSARQYKKSQLPRLRWTPQLHQHFVEAIQSLGGKHKATPKRILQQMRVKGLRIAHIKSHLQMYRNMKGHAIIASENQLLEGYANDFKTQSRNKSELLQTSEETDYDLNQEPRSSAWLVSDDVSNEEEDCRLIKFPGLPFTPLISMMHRQQQIMRFSSSTEPPNHSLQSTSFGNTYINLDLTI 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01853 189 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 9 127 - -
Cca05g01853 189 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 73 IPR006447 GO:0003677
Cca05g01853 189 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Cca05g01853 189 Gene3D - 18 75 - -
Cca05g01853 189 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Cca05g01853 189 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 9 127 IPR044848 GO:0003700
Cca05g01853 189 SUPERFAMILY Homeodomain-like 19 72 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01853 Cca-Chr5 38345444 38349269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01853 7 74 G2-like Transcription Factor Family AT2G42660 60.294 1.22e-24 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca05g01853 Myb_DNA-binding 1.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01853 - - gmx:102661690 234.572