Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01849 ATGAACAACAGTATTCGAGGTTGGGATTTTGAGAGTGATACTTGTCTCAACAACCAAAGAAAGTTAGTAAGGCCGGACCAAGAATTTGTGGAGCTCTTATGGCAAAATGGACAAGTAGTTATGCACAGCCAAACACATAAGCAACCAGTTGGGAACTCATCTAACTTGAGACAGGTTCAGAAAACTGATCAATCAACATTAAGGACTAGTGGGCCATATGAGAACTCTAGCAAGCTGGATCAAGAAAACGCAGCCCCATGGATCCAATACCCATTTGAGGACCCATCGGAGCAAGAATTTTGTTCAAACCTTTTACCTGAGCTACCACCTTGTGAAGTTGAATCTTACAAGCCAATCAGGCAAATGGAAGAGGGAAAAAATGCCAATTTTTTTGCCTCTAGTGCCCCTCATCTTACTTCAATTTCACAACCTCTACCACCTAACATGAAACCCTCCAGTGTTGAGGGATTCCAAGGGAATCCTATGCCTGCTCCAAGATTCCATGTCTCAGATCCATTCCAGAAAATCAATGACTTTGGTGCATCAGGCAAGGTCCTAAACTTTCCTCACTTTTCAACACCCCGTTATGTTTCTTCAGCATCTCAAAAAACTAGTGCTAACACGTCACAAGGAGAGGCTGGAGAGTACTCAGTGATCACAGTTGGTTCAAGTCACTGTGGCAGCAACAACATCCCTCAAGACCAAGATGTTAGCAGGATATCAAGCAATGGTATTTGGGCCACTGCTAATAATGCTACTTTATCTGCCGAGCCTGAAGCTGTTAGAGATTGTGTCCGGAGACCAGTTCATAGGAGTGACAAGGGAAAATCAGAGATGATTGAACCAACTGTGACTTCATCTTCCGGTCGCTCAGGCAGTACTGGTATTGGAAGAACCTGTTCCTTATCAACAAGAGATCATGGCCTAAAGAGAAAAGGAACAGAAGAAGAAGCGTCAGAGGAGCAAAGTGAGGCCACAGAACTTAAATCAGCTGATGAAAATAAAACATCTCAGCGAACGGGGTCTTCCAGAAGGAACCGTGCAGCTGAAGTGCACAACCTATCAGAAAGGAGAAGAAGAGATAGGATCAACGAGAAGATGAGGGCATTGCAGCAATTGATACCTAACAGTAACAAGACAGACAAAGCATCCATGTTAGAAGAGGCAATCGAATACTTGAAATCACTTCAGTTTCAACTTCAGGTAATGTGGATGGGGACTGGTATGACACCAATAATGTTTCCAGGAATTCAGCACTACATGTCACAGATGGGACTGGTTGCACCTTCTTTGCCTTCCATTCACAATCATATGCAATTTCCAAAATTGGCACATGATCAGACTCAGATGCCAAACCAAACTTTAATGTGTCAAAATCCAGTTTTGGGTGCATTTAATTACCAAAACCAGATGCAAAACCCGTGCCTTTCAGAACAATATGCACGTTACATGGGTTACCATCTTATGCAAAGTCCATCTCAGGCAATGAATGCGTCGAGATATGGTTCGGAAGCAGTGCAACATAGTCAAACAATGATTGCACCCACCAATAATAGTAGCGGACCCATGAGCGGAACAGCTAATGTTGATGATGCTGTTAGTGGCAAAACGAGTTCTTCCACTTTTATTACCTGA 1635 0.4318 MNNSIRGWDFESDTCLNNQRKLVRPDQEFVELLWQNGQVVMHSQTHKQPVGNSSNLRQVQKTDQSTLRTSGPYENSSKLDQENAAPWIQYPFEDPSEQEFCSNLLPELPPCEVESYKPIRQMEEGKNANFFASSAPHLTSISQPLPPNMKPSSVEGFQGNPMPAPRFHVSDPFQKINDFGASGKVLNFPHFSTPRYVSSASQKTSANTSQGEAGEYSVITVGSSHCGSNNIPQDQDVSRISSNGIWATANNATLSAEPEAVRDCVRRPVHRSDKGKSEMIEPTVTSSSGRSGSTGIGRTCSLSTRDHGLKRKGTEEEASEEQSEATELKSADENKTSQRTGSSRRNRAAEVHNLSERRRRDRINEKMRALQQLIPNSNKTDKASMLEEAIEYLKSLQFQLQVMWMGTGMTPIMFPGIQHYMSQMGLVAPSLPSIHNHMQFPKLAHDQTQMPNQTLMCQNPVLGAFNYQNQMQNPCLSEQYARYMGYHLMQSPSQAMNASRYGSEAVQHSQTMIAPTNNSSGPMSGTANVDDAVSGKTSSSTFIT 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01849 544 MobiDBLite consensus disorder prediction 256 360 - -
Cca05g01849 544 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 344 410 IPR036638 GO:0046983
Cca05g01849 544 MobiDBLite consensus disorder prediction 279 301 - -
Cca05g01849 544 MobiDBLite consensus disorder prediction 260 278 - -
Cca05g01849 544 PANTHER TRANSCRIPTION FACTOR PIF5 5 519 - -
Cca05g01849 544 Coils Coil 311 331 - -
Cca05g01849 544 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 5 519 IPR031066 -
Cca05g01849 544 Pfam Helix-loop-helix DNA-binding domain 351 397 IPR011598 GO:0046983
Cca05g01849 544 Gene3D - 342 403 IPR036638 GO:0046983
Cca05g01849 544 MobiDBLite consensus disorder prediction 513 544 - -
Cca05g01849 544 SMART finulus 353 402 IPR011598 GO:0046983
Cca05g01849 544 MobiDBLite consensus disorder prediction 304 360 - -
Cca05g01849 544 MobiDBLite consensus disorder prediction 43 80 - -
Cca05g01849 544 CDD bHLH_AtPIF_like 347 410 - -
Cca05g01849 544 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 396 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01849 Cca-Chr5 38293317 38297635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01849 6 521 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 34.701 4.83e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca05g01849 HLH 7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01849 K16189 - gmx:100811777 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01849 05 38293317 38297635 Cca05g01849 05 38293317 38297635 ECH