Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca05g01843 | ATGTCACTCTCACTTCACTCCCCTCTCTTCCCCAACCCTTCTAATTCCACTGTTCAGCTTCGTTTCGCTGAGATCTGGGAAGCTAGGTGGCTTCGGATGATGTTCTCAGCTCCAAGCATGAAGCTCTCTTCTTCTGGATTTAATCAACCGCCTGAAGAAGAAGGGGAGAAAAAATGTTTGAATTCTGAACTATGGCACGCTTGTGCTGGCCCTCTCGTTTCTCTGCCTCCAGTTGGAAGTCGTGTAGTCTACTTTCCTCAAGGTCACAGTGAGCAGGTTGCTGCTTCAACTAACAGGGAAGTAGATGCACATATTCCTAATTACCCTAACTTGCCACCACAACTTATCTGTCAGCTTCACAATGTGACAATGCATGCAGATGCTGAAACAGATGAAGTATATGCTCAGATGACTCTGCAACCTCTAAGTCCACAAGAGCAAAAGGAGGTGTATCTGCTGCCTGCAGAATTGGGTACTCCCAGCAAGCAACCAACCAACTATTTCTGCAAAACATTAACTGCAAGTGATACCAGCACTCATGGAGGATTTTCTGTTCCTCGAAGAGCAGCTGAAAAAGTCTTCCCTCCTCTTGATTATTCACTGCAGCCTCCTGCTCAAGAACTGATTGCCAGAGATCTTCATGATAATGAATGGAAATTCAGACATATATTTCGAGGTCAGCCCAAAAGGCATCTTCTTACTACAGGGTGGAGTGTCTTTGTCAGTGCTAAGAGGCTTGTTGCTGGTGATTCAGTCCTTTTCATCTGGAATGAAAAAAATCAATTACTCCTGGGCATACGGCGAGCGAATCGTCCACAGACTATCATGCCATCATCAGTTCTGTCAAGTGATAGCATGCACATTGGCCTTCTTGCTGCTGCAGCTCATGCAGCTGCCACAAACAGCCGCTTTACTATATTCTACAATCCTAGGGCAAGCCCATCTGAATTTGTCATTCCATTGGCCAAATATGTTAAAGCTGTGTATCATACACGAGTTTCTGTTGGCATGCGATTTAGGATGCTCTTTGAAACAGAAGAATCAAGTGTTCGTCGATACATGGGTACCATAACTGGTATTAGTGATTTAGATCCGGTCCGCTGGCCAAATTCACACTGGCGCTCTGTGAAGGTTGGATGGGATGAGTCTACTGCAGGGGAGAGGCAGCCAAGAGTTTCGTTGTGGGAGATTGAACCTTTGACAACATTCCCAATGTATCCATCTCCATTCCCCTTAAGGTTGAGGCGCCCTTGGCCACCGGGCCTACCTTCTTTATATGGTCTCAAGGATGGAGACATGGGCATTGGTTCTCCATTCATGTGGCTCCAAGGTGGGCTTGGGGATCAAGGAATGCAATCTTTAAACTTCCAGGGGCTTGGTGTTACACCATGGATGCAACCTAGACTTGATGCTTCTATACCAGGTCTCCAACCAGAGTTGTACCAAGCAATGGCTTCTTCTGCATTCCAGGAAATGAGGACAATGGATCCTTCAAAATCTTCCCAATCTCTGTTGCAGTTCCAGCAGACTTCAAATGTTCCCAGTGCTCATACCTCTGAGGTACAGAGGCAACTATTACCACAGTCTCAGCCTCAAAACACCATTCTACACAATTTTCAAGAAAACCAGGTGCCTGCTCAGTCACAACTTCTGCAGCAACAATTGCACCGATACCACCCATATAGTGATCAACGGCAACAACAGCAGCAACTTAAAAGCTTGCCTGTTCAGCAGCAGTTACCAAATGTCATCTCTCCTTTATCTAATTTTGCATCAGGTACCCAGTCTCAATCTCCTCCCTTGCAAGCCCTGGCTTCACATTGCCAGCAGCAGAGCTTTCCTGAACCTATCAGGAATCATATTTCCGGCTCTGATGTTTCCCCGATCCAGAGTCTACTAGGTTCATTCTCCCAGGATGGAACATCCCAGTTACTTAACTTAAATGGATCCAATTCTGTTATATCTTCTGCAGCCATAATATCCAAGCAAATAACTGTTGAACCTCAACTTCCATCTGCTGCTTCTCAGTGTGTATTGCCTCAGGTAGAAAACTTGGGAACATCACAATCAAATGTTTCTGAACTAGCTGCCTTGCCTCCATTTCCTGGAAGAGAACATTCTGCTTACCATGGTGCTGCTGATCCTCAGAGCAATCTTTTATTTGGGATTAACATTGATCCCTCTTCTCTTATGCTGCAAAATGGAATGTCAAACATCAGAAATATAGGCAATGTGAATGATTCTTTATCATTGCCATTTTCTGCTTCAAATTGTGGTGGTGCTACGGGCACTGATTTCCCCTTAAGTTCAAACATGACAACTTCGAGTTGTGTGGATGAATCAGGCTTTTTGCAGTCTTCTGAAAATGTAGACCAAGCAAATACACCAACTGGAACCTTTGTTAAGGTTCACAAGTCAGGGTCCTTTGGAAGGTCACTGGACATTTCTAAGTTCAGCAGCTATGATGAGCTGCGCAGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGCCAACTAGAGGACCCTAAGACTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATGTCCTTCTTCTTGGTGATGATCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATAAAGATACTATCTCCACTAGAAGTGCAACAAATGGGCAAAGTTCTTAGTCCTTCTACTTCTGCCCCAGCGGTGGCTCCACTGAGGTTAGTTTATCGCCTTCAATCTCCCACCTTGATGTTGAAAACATTGAAATCCTCCACCCATGTCAGTAGAACCATCCTACTATGCTTCAAAATCCCATCTTTTTCACTTTGCACTATTGCCCATGTAAacaatttcaatgacaatgaccctgagagtgacacagacacagaGTGGGAGAGGTTGCTCAAACCCTTTGACCTAAAACAGCTCAGAAGGTCTCTCACCCCAATTAGCCCCTCTCAGCTTTGTAAACTCTTGGAGCTCCCTCTTGACATTCCCACTTCACTGGAATTGTTTCAAAGGGCTGGTGCCCAAAAGGGTTATTGTCACACCTTTGATGCTTACTATCTCTTAATTGATAAGCTTGGGGCTGTTGGGGACTTCAAACTTATAGATAAGTTGTTGAAGCAAATGAAAGAGGAAGGGATTGTGTTTAAGGAGTCACTCTTTATTTTGATCATGAGGTATTATGGGAAGGCTGGTTTGCCTGGCCAAGCCACTAGGCTTTTGTTGGACATGTGGGGTGTTTATGCCTGTGATCCCACATTTAAGTCCTACAATGTTGTGTTGGAAATTCTGGTTGACGGGAATTGTCCCAAGGCCTTGTGTATGGTTAATGAGGTTGATTCGGCTTGCTCGCTTCTGAGGGACATGGCGAAGCATGGATGTGTTCCGAGTTCGGTCATTTACCAGACCTTGATTCATGCCCTTTGTGAGAACAAGAGAGTGAATGAGGCGATGCGGCTTTTGGAGGACATGTTTCTGATGTGCTGTGAGCCTGATGTTCAGACCTTTAATGATGTTATCCATGGCCTCTGCAGGGCTGGTCGGATTCATGAGGCGGCAAAGTTGCTTGATCGAATGCTAGTTCGAGGTTTCAGCACTGATGCTCTAACTTATGGGTATTTAATGCAGGGATTGTGCAAAATGGGGCAAGTTGATGAAGCAAGGGCCTTGCTGAACAAAATTCCCAACCCCAATACTGTGCTCTATAATACATTAATTAATGGCTATGTTGCTAGTGGAAGGTTTGAAGAAGCCAAGGATCTTCTGTACAATAACATGGTAATTGCAGGTTATGAGCCTGATGCCTACACGTTTAACATAATGATTGATGGACTGTGCAAGAAAGGGTATTTGGTCTCTGCTCTTGAATTCTTACATGAGGTGGTAGCAAAAGGCTTTGAGCCCAATGTGATCACGTACACCATATTGATAAATGGTTTCTGCAAGCAAGGTAGATTAGAGGAAGCTGCAGAAGTTGTGAATAGCATGTCAGCCAAGGGTCTCAGTCTGAATACAGTGGGGTACAATTGCTTGATCTGTGCACTATGCAAGGATGAGAAGATTGAAGAAGCTTTACAGCTGTTTGGTGAAATGCCAAGCAAAGGATGTAAACCTGACATTTATACATTTAATTCTTTAATTGATGGATTGTGCAAAAATGATAAGATGGAAGATGCCTTGAGTATATATCATGACATGTTCTTGGAGGGTGTTATTGCCAACACCGTAACATACAACACATTGATTCATGCATTTCTTAGGAGAGATTCAGTTCAACAAGCGTTTAAGCTTGTTGATGAAATGCTATTTAGGGGGTGTCCTCTCGACAACATTACATATAGTGGCCTTATTAAAGCTCTCTGTAAAACTGGGGCAGTTGAAAAAGGATTGGGATTGTTAGAAGAAATGCTTGGGAAAGGGATTTTTCCTACAGTTAACTCTTGCAATATTCTGATCAGTGCCTTGTGTAGAACTGGAAAAGTAAATGATGCTCTAAAATTTCTTTGGGATATGATTCATCGTGGTCTGACACCGGATATAGTCACTTATAACTGCCTGATCAATGGTCTTTGCAAGATGGGTCATGTTCAAGAGGCATTGAACCTTTTTAACAAGTTACAAGGTGAAGGAATTCGTCCTGATGCTATTACATACAACACACTGATCAGTAGGCACTGTCATGAGGTTGAGAGAAAGATAGCTGACTGGTTCCACTACTACTGCTGGTTGAGAGTAAGTTATTCTCAACTGTCAGCTGGATGTTATCTGTCAGATGGTGGATCTGAGTTGAAGTGGTCAAACTCAACGCTAAATTCAACTCAAGAGATGCATGATTCTAAAGGTCCAATCACACAGAAAGAAATGGAATATGTTGAACAGTGTGTCCTAGCAAAGTATCCAGACTATGCTGGCCTCATTAAAGGAGATGGAAATGGGATAGGACTTGTCTAG | 4953 | 0.4345 | MSLSLHSPLFPNPSNSTVQLRFAEIWEARWLRMMFSAPSMKLSSSGFNQPPEEEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNREVDAHIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQEQKEVYLLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSLQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTIMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLRRPWPPGLPSLYGLKDGDMGIGSPFMWLQGGLGDQGMQSLNFQGLGVTPWMQPRLDASIPGLQPELYQAMASSAFQEMRTMDPSKSSQSLLQFQQTSNVPSAHTSEVQRQLLPQSQPQNTILHNFQENQVPAQSQLLQQQLHRYHPYSDQRQQQQQLKSLPVQQQLPNVISPLSNFASGTQSQSPPLQALASHCQQQSFPEPIRNHISGSDVSPIQSLLGSFSQDGTSQLLNLNGSNSVISSAAIISKQITVEPQLPSAASQCVLPQVENLGTSQSNVSELAALPPFPGREHSAYHGAADPQSNLLFGINIDPSSLMLQNGMSNIRNIGNVNDSLSLPFSASNCGGATGTDFPLSSNMTTSSCVDESGFLQSSENVDQANTPTGTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPKTQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILSPLEVQQMGKVLSPSTSAPAVAPLRLVYRLQSPTLMLKTLKSSTHVSRTILLCFKIPSFSLCTIAHVNNFNDNDPESDTDTEWERLLKPFDLKQLRRSLTPISPSQLCKLLELPLDIPTSLELFQRAGAQKGYCHTFDAYYLLIDKLGAVGDFKLIDKLLKQMKEEGIVFKESLFILIMRYYGKAGLPGQATRLLLDMWGVYACDPTFKSYNVVLEILVDGNCPKALCMVNEVDSACSLLRDMAKHGCVPSSVIYQTLIHALCENKRVNEAMRLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLVRGFSTDALTYGYLMQGLCKMGQVDEARALLNKIPNPNTVLYNTLINGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLCKKGYLVSALEFLHEVVAKGFEPNVITYTILINGFCKQGRLEEAAEVVNSMSAKGLSLNTVGYNCLICALCKDEKIEEALQLFGEMPSKGCKPDIYTFNSLIDGLCKNDKMEDALSIYHDMFLEGVIANTVTYNTLIHAFLRRDSVQQAFKLVDEMLFRGCPLDNITYSGLIKALCKTGAVEKGLGLLEEMLGKGIFPTVNSCNILISALCRTGKVNDALKFLWDMIHRGLTPDIVTYNCLINGLCKMGHVQEALNLFNKLQGEGIRPDAITYNTLISRHCHEVERKIADWFHYYCWLRVSYSQLSAGCYLSDGGSELKWSNSTLNSTQEMHDSKGPITQKEMEYVEQCVLAKYPDYAGLIKGDGNGIGLV | 1650 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca05g01843 | 1650 | Gene3D | Tetratricopeptide repeat domain | 1461 | 1620 | IPR011990 | GO:0005515 | |
| Cca05g01843 | 1650 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 1303 | 1337 | IPR002885 | - | |
| Cca05g01843 | 1650 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 1408 | 1442 | IPR002885 | - | |
| Cca05g01843 | 1650 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 1268 | 1302 | IPR002885 | - | |
| Cca05g01843 | 1650 | ProSiteProfiles | PB1 domain profile. | 798 | 884 | IPR000270 | GO:0005515 | |
| Cca05g01843 | 1650 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 1201 | 1231 | IPR002885 | - | |
| Cca05g01843 | 1650 | SUPERFAMILY | CAD & PB1 domains | 791 | 874 | - | - | |
| Cca05g01843 | 1650 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 1478 | 1512 | IPR002885 | - | |
| Cca05g01843 | 1650 | CDD | B3_DNA | 167 | 268 | IPR003340 | GO:0003677 | |
| Cca05g01843 | 1650 | Gene3D | Tetratricopeptide repeat domain | 958 | 1103 | IPR011990 | GO:0005515 |
Showing 1 to 10 of 55 entries
Duplication type information
Functional genes information
Transcription factors information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca05g01843 | - | - | gmx:100809105 | 1600.88 |
Showing 1 to 1 of 1 entries