Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01843 ATGTCACTCTCACTTCACTCCCCTCTCTTCCCCAACCCTTCTAATTCCACTGTTCAGCTTCGTTTCGCTGAGATCTGGGAAGCTAGGTGGCTTCGGATGATGTTCTCAGCTCCAAGCATGAAGCTCTCTTCTTCTGGATTTAATCAACCGCCTGAAGAAGAAGGGGAGAAAAAATGTTTGAATTCTGAACTATGGCACGCTTGTGCTGGCCCTCTCGTTTCTCTGCCTCCAGTTGGAAGTCGTGTAGTCTACTTTCCTCAAGGTCACAGTGAGCAGGTTGCTGCTTCAACTAACAGGGAAGTAGATGCACATATTCCTAATTACCCTAACTTGCCACCACAACTTATCTGTCAGCTTCACAATGTGACAATGCATGCAGATGCTGAAACAGATGAAGTATATGCTCAGATGACTCTGCAACCTCTAAGTCCACAAGAGCAAAAGGAGGTGTATCTGCTGCCTGCAGAATTGGGTACTCCCAGCAAGCAACCAACCAACTATTTCTGCAAAACATTAACTGCAAGTGATACCAGCACTCATGGAGGATTTTCTGTTCCTCGAAGAGCAGCTGAAAAAGTCTTCCCTCCTCTTGATTATTCACTGCAGCCTCCTGCTCAAGAACTGATTGCCAGAGATCTTCATGATAATGAATGGAAATTCAGACATATATTTCGAGGTCAGCCCAAAAGGCATCTTCTTACTACAGGGTGGAGTGTCTTTGTCAGTGCTAAGAGGCTTGTTGCTGGTGATTCAGTCCTTTTCATCTGGAATGAAAAAAATCAATTACTCCTGGGCATACGGCGAGCGAATCGTCCACAGACTATCATGCCATCATCAGTTCTGTCAAGTGATAGCATGCACATTGGCCTTCTTGCTGCTGCAGCTCATGCAGCTGCCACAAACAGCCGCTTTACTATATTCTACAATCCTAGGGCAAGCCCATCTGAATTTGTCATTCCATTGGCCAAATATGTTAAAGCTGTGTATCATACACGAGTTTCTGTTGGCATGCGATTTAGGATGCTCTTTGAAACAGAAGAATCAAGTGTTCGTCGATACATGGGTACCATAACTGGTATTAGTGATTTAGATCCGGTCCGCTGGCCAAATTCACACTGGCGCTCTGTGAAGGTTGGATGGGATGAGTCTACTGCAGGGGAGAGGCAGCCAAGAGTTTCGTTGTGGGAGATTGAACCTTTGACAACATTCCCAATGTATCCATCTCCATTCCCCTTAAGGTTGAGGCGCCCTTGGCCACCGGGCCTACCTTCTTTATATGGTCTCAAGGATGGAGACATGGGCATTGGTTCTCCATTCATGTGGCTCCAAGGTGGGCTTGGGGATCAAGGAATGCAATCTTTAAACTTCCAGGGGCTTGGTGTTACACCATGGATGCAACCTAGACTTGATGCTTCTATACCAGGTCTCCAACCAGAGTTGTACCAAGCAATGGCTTCTTCTGCATTCCAGGAAATGAGGACAATGGATCCTTCAAAATCTTCCCAATCTCTGTTGCAGTTCCAGCAGACTTCAAATGTTCCCAGTGCTCATACCTCTGAGGTACAGAGGCAACTATTACCACAGTCTCAGCCTCAAAACACCATTCTACACAATTTTCAAGAAAACCAGGTGCCTGCTCAGTCACAACTTCTGCAGCAACAATTGCACCGATACCACCCATATAGTGATCAACGGCAACAACAGCAGCAACTTAAAAGCTTGCCTGTTCAGCAGCAGTTACCAAATGTCATCTCTCCTTTATCTAATTTTGCATCAGGTACCCAGTCTCAATCTCCTCCCTTGCAAGCCCTGGCTTCACATTGCCAGCAGCAGAGCTTTCCTGAACCTATCAGGAATCATATTTCCGGCTCTGATGTTTCCCCGATCCAGAGTCTACTAGGTTCATTCTCCCAGGATGGAACATCCCAGTTACTTAACTTAAATGGATCCAATTCTGTTATATCTTCTGCAGCCATAATATCCAAGCAAATAACTGTTGAACCTCAACTTCCATCTGCTGCTTCTCAGTGTGTATTGCCTCAGGTAGAAAACTTGGGAACATCACAATCAAATGTTTCTGAACTAGCTGCCTTGCCTCCATTTCCTGGAAGAGAACATTCTGCTTACCATGGTGCTGCTGATCCTCAGAGCAATCTTTTATTTGGGATTAACATTGATCCCTCTTCTCTTATGCTGCAAAATGGAATGTCAAACATCAGAAATATAGGCAATGTGAATGATTCTTTATCATTGCCATTTTCTGCTTCAAATTGTGGTGGTGCTACGGGCACTGATTTCCCCTTAAGTTCAAACATGACAACTTCGAGTTGTGTGGATGAATCAGGCTTTTTGCAGTCTTCTGAAAATGTAGACCAAGCAAATACACCAACTGGAACCTTTGTTAAGGTTCACAAGTCAGGGTCCTTTGGAAGGTCACTGGACATTTCTAAGTTCAGCAGCTATGATGAGCTGCGCAGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGCCAACTAGAGGACCCTAAGACTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATGTCCTTCTTCTTGGTGATGATCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATAAAGATACTATCTCCACTAGAAGTGCAACAAATGGGCAAAGTTCTTAGTCCTTCTACTTCTGCCCCAGCGGTGGCTCCACTGAGGTTAGTTTATCGCCTTCAATCTCCCACCTTGATGTTGAAAACATTGAAATCCTCCACCCATGTCAGTAGAACCATCCTACTATGCTTCAAAATCCCATCTTTTTCACTTTGCACTATTGCCCATGTAAacaatttcaatgacaatgaccctgagagtgacacagacacagaGTGGGAGAGGTTGCTCAAACCCTTTGACCTAAAACAGCTCAGAAGGTCTCTCACCCCAATTAGCCCCTCTCAGCTTTGTAAACTCTTGGAGCTCCCTCTTGACATTCCCACTTCACTGGAATTGTTTCAAAGGGCTGGTGCCCAAAAGGGTTATTGTCACACCTTTGATGCTTACTATCTCTTAATTGATAAGCTTGGGGCTGTTGGGGACTTCAAACTTATAGATAAGTTGTTGAAGCAAATGAAAGAGGAAGGGATTGTGTTTAAGGAGTCACTCTTTATTTTGATCATGAGGTATTATGGGAAGGCTGGTTTGCCTGGCCAAGCCACTAGGCTTTTGTTGGACATGTGGGGTGTTTATGCCTGTGATCCCACATTTAAGTCCTACAATGTTGTGTTGGAAATTCTGGTTGACGGGAATTGTCCCAAGGCCTTGTGTATGGTTAATGAGGTTGATTCGGCTTGCTCGCTTCTGAGGGACATGGCGAAGCATGGATGTGTTCCGAGTTCGGTCATTTACCAGACCTTGATTCATGCCCTTTGTGAGAACAAGAGAGTGAATGAGGCGATGCGGCTTTTGGAGGACATGTTTCTGATGTGCTGTGAGCCTGATGTTCAGACCTTTAATGATGTTATCCATGGCCTCTGCAGGGCTGGTCGGATTCATGAGGCGGCAAAGTTGCTTGATCGAATGCTAGTTCGAGGTTTCAGCACTGATGCTCTAACTTATGGGTATTTAATGCAGGGATTGTGCAAAATGGGGCAAGTTGATGAAGCAAGGGCCTTGCTGAACAAAATTCCCAACCCCAATACTGTGCTCTATAATACATTAATTAATGGCTATGTTGCTAGTGGAAGGTTTGAAGAAGCCAAGGATCTTCTGTACAATAACATGGTAATTGCAGGTTATGAGCCTGATGCCTACACGTTTAACATAATGATTGATGGACTGTGCAAGAAAGGGTATTTGGTCTCTGCTCTTGAATTCTTACATGAGGTGGTAGCAAAAGGCTTTGAGCCCAATGTGATCACGTACACCATATTGATAAATGGTTTCTGCAAGCAAGGTAGATTAGAGGAAGCTGCAGAAGTTGTGAATAGCATGTCAGCCAAGGGTCTCAGTCTGAATACAGTGGGGTACAATTGCTTGATCTGTGCACTATGCAAGGATGAGAAGATTGAAGAAGCTTTACAGCTGTTTGGTGAAATGCCAAGCAAAGGATGTAAACCTGACATTTATACATTTAATTCTTTAATTGATGGATTGTGCAAAAATGATAAGATGGAAGATGCCTTGAGTATATATCATGACATGTTCTTGGAGGGTGTTATTGCCAACACCGTAACATACAACACATTGATTCATGCATTTCTTAGGAGAGATTCAGTTCAACAAGCGTTTAAGCTTGTTGATGAAATGCTATTTAGGGGGTGTCCTCTCGACAACATTACATATAGTGGCCTTATTAAAGCTCTCTGTAAAACTGGGGCAGTTGAAAAAGGATTGGGATTGTTAGAAGAAATGCTTGGGAAAGGGATTTTTCCTACAGTTAACTCTTGCAATATTCTGATCAGTGCCTTGTGTAGAACTGGAAAAGTAAATGATGCTCTAAAATTTCTTTGGGATATGATTCATCGTGGTCTGACACCGGATATAGTCACTTATAACTGCCTGATCAATGGTCTTTGCAAGATGGGTCATGTTCAAGAGGCATTGAACCTTTTTAACAAGTTACAAGGTGAAGGAATTCGTCCTGATGCTATTACATACAACACACTGATCAGTAGGCACTGTCATGAGGTTGAGAGAAAGATAGCTGACTGGTTCCACTACTACTGCTGGTTGAGAGTAAGTTATTCTCAACTGTCAGCTGGATGTTATCTGTCAGATGGTGGATCTGAGTTGAAGTGGTCAAACTCAACGCTAAATTCAACTCAAGAGATGCATGATTCTAAAGGTCCAATCACACAGAAAGAAATGGAATATGTTGAACAGTGTGTCCTAGCAAAGTATCCAGACTATGCTGGCCTCATTAAAGGAGATGGAAATGGGATAGGACTTGTCTAG 4953 0.4345 MSLSLHSPLFPNPSNSTVQLRFAEIWEARWLRMMFSAPSMKLSSSGFNQPPEEEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNREVDAHIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQEQKEVYLLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSLQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTIMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLRRPWPPGLPSLYGLKDGDMGIGSPFMWLQGGLGDQGMQSLNFQGLGVTPWMQPRLDASIPGLQPELYQAMASSAFQEMRTMDPSKSSQSLLQFQQTSNVPSAHTSEVQRQLLPQSQPQNTILHNFQENQVPAQSQLLQQQLHRYHPYSDQRQQQQQLKSLPVQQQLPNVISPLSNFASGTQSQSPPLQALASHCQQQSFPEPIRNHISGSDVSPIQSLLGSFSQDGTSQLLNLNGSNSVISSAAIISKQITVEPQLPSAASQCVLPQVENLGTSQSNVSELAALPPFPGREHSAYHGAADPQSNLLFGINIDPSSLMLQNGMSNIRNIGNVNDSLSLPFSASNCGGATGTDFPLSSNMTTSSCVDESGFLQSSENVDQANTPTGTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPKTQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILSPLEVQQMGKVLSPSTSAPAVAPLRLVYRLQSPTLMLKTLKSSTHVSRTILLCFKIPSFSLCTIAHVNNFNDNDPESDTDTEWERLLKPFDLKQLRRSLTPISPSQLCKLLELPLDIPTSLELFQRAGAQKGYCHTFDAYYLLIDKLGAVGDFKLIDKLLKQMKEEGIVFKESLFILIMRYYGKAGLPGQATRLLLDMWGVYACDPTFKSYNVVLEILVDGNCPKALCMVNEVDSACSLLRDMAKHGCVPSSVIYQTLIHALCENKRVNEAMRLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLVRGFSTDALTYGYLMQGLCKMGQVDEARALLNKIPNPNTVLYNTLINGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLCKKGYLVSALEFLHEVVAKGFEPNVITYTILINGFCKQGRLEEAAEVVNSMSAKGLSLNTVGYNCLICALCKDEKIEEALQLFGEMPSKGCKPDIYTFNSLIDGLCKNDKMEDALSIYHDMFLEGVIANTVTYNTLIHAFLRRDSVQQAFKLVDEMLFRGCPLDNITYSGLIKALCKTGAVEKGLGLLEEMLGKGIFPTVNSCNILISALCRTGKVNDALKFLWDMIHRGLTPDIVTYNCLINGLCKMGHVQEALNLFNKLQGEGIRPDAITYNTLISRHCHEVERKIADWFHYYCWLRVSYSQLSAGCYLSDGGSELKWSNSTLNSTQEMHDSKGPITQKEMEYVEQCVLAKYPDYAGLIKGDGNGIGLV 1650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01843 1650 Gene3D Tetratricopeptide repeat domain 1461 1620 IPR011990 GO:0005515
Cca05g01843 1650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1303 1337 IPR002885 -
Cca05g01843 1650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1408 1442 IPR002885 -
Cca05g01843 1650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1268 1302 IPR002885 -
Cca05g01843 1650 ProSiteProfiles PB1 domain profile. 798 884 IPR000270 GO:0005515
Cca05g01843 1650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1201 1231 IPR002885 -
Cca05g01843 1650 SUPERFAMILY CAD & PB1 domains 791 874 - -
Cca05g01843 1650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1478 1512 IPR002885 -
Cca05g01843 1650 CDD B3_DNA 167 268 IPR003340 GO:0003677
Cca05g01843 1650 Gene3D Tetratricopeptide repeat domain 958 1103 IPR011990 GO:0005515
Cca05g01843 1650 Gene3D Tetratricopeptide repeat domain 1367 1460 IPR011990 GO:0005515
Cca05g01843 1650 ProSiteProfiles B3 DNA-binding domain profile. 168 270 IPR003340 GO:0003677
Cca05g01843 1650 Pfam PPR repeat 1020 1048 IPR002885 -
Cca05g01843 1650 MobiDBLite consensus disorder prediction 492 523 - -
Cca05g01843 1650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1373 1407 IPR002885 -
Cca05g01843 1650 Pfam PPR repeat family 1338 1386 IPR002885 -
Cca05g01843 1650 Pfam PPR repeat family 1512 1561 IPR002885 -
Cca05g01843 1650 Pfam PPR repeat family 1408 1456 IPR002885 -
Cca05g01843 1650 Pfam PPR repeat family 1231 1281 IPR002885 -
Cca05g01843 1650 Pfam PPR repeat family 1165 1214 IPR002885 -
Cca05g01843 1650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1513 1547 IPR002885 -
Cca05g01843 1650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1338 1372 IPR002885 -
Cca05g01843 1650 Pfam Auxin response factor 294 377 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca05g01843 1650 Gene3D - 794 889 - -
Cca05g01843 1650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1166 1200 IPR002885 -
Cca05g01843 1650 Gene3D Tetratricopeptide repeat domain 1230 1362 IPR011990 GO:0005515
Cca05g01843 1650 Gene3D - 332 404 - -
Cca05g01843 1650 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 40 906 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca05g01843 1650 SMART B3_2 168 270 IPR003340 GO:0003677
Cca05g01843 1650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1232 1267 IPR002885 -
Cca05g01843 1650 PANTHER AUXIN RESPONSE FACTOR 6 40 906 - -
Cca05g01843 1650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1443 1477 IPR002885 -
Cca05g01843 1650 Pfam PPR repeat 1298 1330 IPR002885 -
Cca05g01843 1650 Pfam PPR repeat 1473 1505 IPR002885 -
Cca05g01843 1650 Pfam PPR repeat 1127 1158 IPR002885 -
Cca05g01843 1650 Pfam AUX/IAA family 787 882 IPR033389 -
Cca05g01843 1650 Gene3D Tetratricopeptide repeat domain 1105 1160 IPR011990 GO:0005515
Cca05g01843 1650 Gene3D Tetratricopeptide repeat domain 1161 1229 IPR011990 GO:0005515
Cca05g01843 1650 Pfam B3 DNA binding domain 168 269 IPR003340 GO:0003677
Cca05g01843 1650 Gene3D - 166 269 IPR015300 -
Cca05g01843 1650 SUPERFAMILY DNA-binding pseudobarrel domain 153 297 IPR015300 -
Cca05g01843 1650 TIGRFAM PPR: pentatricopeptide repeat domain 1234 1269 IPR002885 -
Cca05g01843 1650 TIGRFAM PPR: pentatricopeptide repeat domain 1270 1304 IPR002885 -
Cca05g01843 1650 TIGRFAM PPR: pentatricopeptide repeat domain 1445 1478 IPR002885 -
Cca05g01843 1650 TIGRFAM PPR: pentatricopeptide repeat domain 1481 1514 IPR002885 -
Cca05g01843 1650 TIGRFAM PPR: pentatricopeptide repeat domain 1105 1131 IPR002885 -
Cca05g01843 1650 TIGRFAM PPR: pentatricopeptide repeat domain 1342 1374 IPR002885 -
Cca05g01843 1650 TIGRFAM PPR: pentatricopeptide repeat domain 1133 1167 IPR002885 -
Cca05g01843 1650 TIGRFAM PPR: pentatricopeptide repeat domain 1375 1408 IPR002885 -
Cca05g01843 1650 TIGRFAM PPR: pentatricopeptide repeat domain 1515 1549 IPR002885 -
Cca05g01843 1650 TIGRFAM PPR: pentatricopeptide repeat domain 1204 1227 IPR002885 -
Cca05g01843 1650 TIGRFAM PPR: pentatricopeptide repeat domain 1410 1443 IPR002885 -
Cca05g01843 1650 TIGRFAM PPR: pentatricopeptide repeat domain 1169 1201 IPR002885 -
Cca05g01843 1650 TIGRFAM PPR: pentatricopeptide repeat domain 1305 1338 IPR002885 -
Cca05g01843 1650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1131 1165 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01843 Cca-Chr5 38217316 38232310 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01843 137 889 B3 DNA Binding Superfamily AT5G37020 55.191 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca05g01843 AUX_IAA 2.2e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01843 - - gmx:100809105 1600.88