Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01838 ATGCTAACCGCAATCCTCAGAAGAGCTTCTTCCACTCTGTCAAGGCGCGCTTTCCCCGCCGCCTTATTCTCCGCCTCCACCGCCGCCAGCAACAACCTCCGCCCACTCTCCGCCGCCTTCAATTCCAGAACCTTCCACTCGCAACCGGGGCCCTTGAATTTCCGCTCCTCGTTATGTCACCGTGCGGAATACGCCGTTGACGATTTCCCTTACGAAGAAGGGTCCAAAGGGAACGCCGACGAAGGCCTCGAGATCGCGAAGCTCGGCATTTCTCAGGATATTGTCTCTGCTTTGGCCAAGAAAGGCATCGCCAGGCTCTTCCCCATTCAGAGGGCTGTGCTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCTAGAACTGGAACTGGGAAAACCCTTGCTTTTGGGATTCCCATCATGGATAAGATCATTCAGTTTAATGCTAAGCATGGGCGGGGAAGGGATCCTTTGGCTTTGGTTTTGGCTCCGACCAGAGAGCTTGCGCGGCAGGTTGAAAAGGAGTTCTATGAGGCAGCGCCTAGCTTGGATACAATTTGTGTTTATGGGGGTACGCCCATCTCTAAGCAGATGAGGCAGCTGGATTATGGTGTTGATATTGCCGTGGGGACGCCTGGTCGGATTATTGACCTTCTCAGCAGAGGTGCTCTAAATTTGAAGGAAGTTCAATTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTGGGCTTTCAGGAAGATGTGGAGAAGATCTTGGAGAGGTTGCCCCCAAAACGTCAGACTCTTATGTTCTCTGCAACCATGCCGTCTTGGATAAAACAGATTACACGCAATTACTTGAATAATCCCCTCACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGGATTTCACTGTTCTCCATTGCAACTGATTTGTATGTTAAAGCGGGAATTCTTGCACCTCTAATAACAGAACATGCAAAAGGAGGGAAGTGTATTGTTTTCACTCAAACAAAACGTGATGCTGATCGGCTATCGAATGCCATGGCAAGAAGTGTTCAATGTGAGGCTTTGCATGGAGACATATCACAAGCTCAGAGGGAAAAAACTCTTGCTGGCTTCAGAAATGGCCATTTTAATGTTTTAGTGGCCACTGATGTTGCCTCACGTGGGCTTGATATCCCTAATGTTGATCTTGTAATACATTATGATCTTCCCAATAATTCGGAGATATTTGTTCATCGATCTGGACGAACAGGGCGTGCTGGTAAGAAAGGAACTGCTATTCTTGTATATACAGATGATCAATCCAGGGCTGTTAAGCTAATTGAGCGTGATGTGGGCTGTAGATTTACAGAGCTACCACGGATTGCTGTTGATAGGGCATCAGTGGACACATTTGGCGGTATGGGTGGTGGTGGTGGGCGATTTGGTTCTTTTGGAGGTACAAGGGATCGTGGTAGATATGGTGATACAGGTTTTGGCCGTGGTCTTGGATCTGGCCGCTCTAGCTATGGAAATTCTGGTGAGAGGTTTGGTGGACAGAATTATAACCGTTTTGATGGCCCTGGTTTGAGTCAATCAGGAGGGGGATTTTCAGGTAATTCATCTGGTCGTTTTGGCTCATCTGGTGGCATTGTTTCAGGTCAATCAGGTAGTAGATCCGGTGGATCATCAAGTGGGTTTAAGTTTGGTCGTCAAGATGATTTTGGGGGATTTGGTGGTTCAGATCGTTCAGGTGGTTTTGGAGATCGCGGCTCAGGTCAGCGTAGTGGTTTTGGTGATTCTCGTGGTAGTAATAGAAGACCTTTTTAA 1812 0.4774 MLTAILRRASSTLSRRAFPAALFSASTAASNNLRPLSAAFNSRTFHSQPGPLNFRSSLCHRAEYAVDDFPYEEGSKGNADEGLEIAKLGISQDIVSALAKKGIARLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRDPLALVLAPTRELARQVEKEFYEAAPSLDTICVYGGTPISKQMRQLDYGVDIAVGTPGRIIDLLSRGALNLKEVQFVVLDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIKQITRNYLNNPLTIDLVGDSDQKLADGISLFSIATDLYVKAGILAPLITEHAKGGKCIVFTQTKRDADRLSNAMARSVQCEALHGDISQAQREKTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYDLPNNSEIFVHRSGRTGRAGKKGTAILVYTDDQSRAVKLIERDVGCRFTELPRIAVDRASVDTFGGMGGGGGRFGSFGGTRDRGRYGDTGFGRGLGSGRSSYGNSGERFGGQNYNRFDGPGLSQSGGGFSGNSSGRFGSSGGIVSGQSGSRSGGSSSGFKFGRQDDFGGFGGSDRSGGFGDRGSGQRSGFGDSRGSNRRPF 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01838 603 Gene3D - 308 463 IPR027417 -
Cca05g01838 603 SMART helicmild6 342 422 IPR001650 -
Cca05g01838 603 Pfam Helicase conserved C-terminal domain 317 422 IPR001650 -
Cca05g01838 603 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-LIKE 36 508 - -
Cca05g01838 603 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 317 461 IPR001650 -
Cca05g01838 603 CDD SF2_C_DEAD 314 431 - -
Cca05g01838 603 SMART ultradead3 102 305 IPR014001 -
Cca05g01838 603 Gene3D - 84 292 IPR027417 -
Cca05g01838 603 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 36 508 - -
Cca05g01838 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 443 IPR027417 -
Cca05g01838 603 MobiDBLite consensus disorder prediction 490 603 - -
Cca05g01838 603 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 114 288 IPR014001 -
Cca05g01838 603 Pfam DEAD/DEAH box helicase 107 276 IPR011545 GO:0003676|GO:0005524
Cca05g01838 603 CDD DEADc 94 289 - -
Cca05g01838 603 MobiDBLite consensus disorder prediction 500 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01838 Cca-Chr5 38170979 38175713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01838 88 454 Eukaryotic Initiation Factors Gene Family AT3G19760 33.423 5.32e-68 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01838 - - gmx:100786041 876.7