Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01836 ATGGCACATAATATGCATTCACCCCCCTTTTCACCACCCTACTCTGAGGATGACAAAATCACTAGCTTTGCCACCCTTTCCAATGGCTCTACCCCTATTGTTGGCTTCTTTCCTAACACCAACAACAGTGATAAGCCTTCAGCGTTACTGccaccaacatcaccatcaccaacaccttcatcaCCTTCCCTTGTTACCCCTAGTGAGCTAGATGTGCTTTTCCATGAACCAGACGAGCAAATGCAACCACAACCTGCTGGGAAGCCCAGAGGGAGGCCACCTGGGTCAAAAAATAAGCCCAAGCCAGCCATGAACCGTCACCAACCCATGCTCTTGACTGTTCCCGCTGGCATGGACATTGTCAATGCCATCATCGATGCCACTCATAACCAAGATGTCACCGTCATGGTGTACCATGCTATGGGTTCCATTTCTGAAGCTACCATTTGCAACCCTCTCGATCGTTCCCGTGATTTTTTCTTCCAGGGAAACTTGTTCATGCGGTCTTTCTCGGGCTTTTACTCCAAGAGTTTTTCACCTTCTCACACCCCTTATTCCTTTTTCACAGCTCAAGTCTCCAGGGCAGGGACTCCCAACATCTTTGGTGGTCGTGTTCGAGGCAAACTTATTGCTGCTAAACCTCTGCAAATTATGGTTTTTTTCATCAAGAAGATCGAGTACTATAAGGCCATGACTCCCTTTATCGATCCAAATGTGACCAAGCCTTATTATAACAACCCCACCAATTGA 750 0.4507 MAHNMHSPPFSPPYSEDDKITSFATLSNGSTPIVGFFPNTNNSDKPSALLPPTSPSPTPSSPSLVTPSELDVLFHEPDEQMQPQPAGKPRGRPPGSKNKPKPAMNRHQPMLLTVPAGMDIVNAIIDATHNQDVTVMVYHAMGSISEATICNPLDRSRDFFFQGNLFMRSFSGFYSKSFSPSHTPYSFFTAQVSRAGTPNIFGGRVRGKLIAAKPLQIMVFFIKKIEYYKAMTPFIDPNVTKPYYNNPTN 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01836 249 MobiDBLite consensus disorder prediction 18 49 - -
Cca05g01836 249 Gene3D - 109 239 - -
Cca05g01836 249 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 56 243 IPR014476 GO:0003680
Cca05g01836 249 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 56 243 - -
Cca05g01836 249 Pfam Plants and Prokaryotes Conserved (PCC) domain 109 220 IPR005175 -
Cca05g01836 249 SUPERFAMILY AF0104/ALDC/Ptd012-like 105 233 - -
Cca05g01836 249 MobiDBLite consensus disorder prediction 1 107 - -
Cca05g01836 249 ProSiteProfiles PPC domain profile profile. 101 243 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01836 Cca-Chr5 38160626 38161528 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01836 88 229 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 34.810 9.78e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01836 - - ccaj:109810579 483.026