Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01835 ATGGGAACTCcaactccaactccaacaacaacaacaacTCTTAGCCTTGTACTTATTCTCCTCCTTTTGTGCTTAGTATGGCcttgttcttctgcttcttctcttcCCATGTCTCTTAGAAGGCAAGCCTCTATCTTGGTTTCCCTTAAGCAAGATTTTGAGGCCAACACTGAATCCTTGAGCACATGGGACATGTCTAACTACATGTCCGTTTGCACTTGGAAGGGCATTGAGTGTGACCAAAAGAACAGGTCAGTGGTGTCATTGGACATATCCAACCTCAACCTTTCTGGCACACTTTCACCAGCCATCACAGGACTCAGGAGCCTTGTGAGTCTTTCACTTGAAGGGAATGGCTTCTCGGGAGGGTTTCCTAGTGATGTTCACAGGCTAGAAGGGTTGAGATTCCTCAACATATCTGTCAACATGTTCAGTGGGGGCATGAGTTGGGAATTCTCTCATTTGAGAGAGCTTGAGGTGCTTGATGCTTATGACAATGAGTTCAATTGCTCACTCCCTCTTGGTGTGATTGAGCTACCTAAGCTTAATTCCTTGAATTTTGGCGGGAATTATTTTTATGGTGAAATCCCTCCAAGTTATGGAGACATGGTGCAGCTCAACTTTCTGTCTCTTGCAGGGAATGATTTGAGGGGGGTCATACCAGCTGAGCTTGGAAACCTCACTAACCTGACACAGCTTTTCTTGGGATACTATAATCAGTTTGATGGTGGAATCCCTCCTCAGTTTGGTAAGTTGGTTAATTTGGTTCATCTTGACCTTGCAAACTGTGGCTTGACAGGTACAATTCCACCTGAGTTGGGAAACCTCAAGAAATTGGACACTCTCTTTTTGCAAACTAACCAGCTCAGTGGCTCAATCCCTCCCCAAATTGGCAACATGAGTGGCCTCAAGTGTCTTGATCTATCAAACAATGAGCTAACAGGAGACATTCCAAATGAGTTCTCAGGCCTTCATGAGCTCACCCTCTTAAACCTGTTCATCAACAGGTTGCATGGTGAAATTCCACCTTTCATTGCTGAGCTACCGAAGTTGGAAGTGTTGAAGCTTTGGCAGAACAACTTCACAGGTACAATTCCTTCTAAGCTTGGCCAGAATGGTAAGTTGGCTGAGCTTGACCTGTCAACAAACAAGCTCACTGGATTAGTGCCTAAATCTCTATGCCTTGGAAGGAGACTGAGGATTTTGATCCTTCTCAACAATTTTCTCTTTGGATCTTTACCTGCTGATCTTGGCCAATGCTACTCCCTCCAAAGAGTTCGTTTGGGGCAGAACTACTTGACAGGACCAATACCAAATGGTTTCCTCTACTTGCCTGAACTGTCCCTTTTGGAATTACAGAACAATTACCTCAGTGGTTGGCTTCCACAAGAAACAAGCACTACACCCTCCAAACTTGGACAGTTGAATCTATCAAACAACCGCTTATCAGGGTCTCTACCAGCCTCCATTGGAAACTTCCCCAACATGCAAATTCTGCTGCTTCATGGAAACAGAATCTCAGGAGAAATCCCTCCAGATATAGGGAGGTTGAAAAATATACTCAAATTGGATATGAGTGTCAACAACTTTTCAGGCAGCATTCCTCCTGAGATAGGTAACTGTTTGTTGCTCACGTATTTAGATTTGAGCCAAAACCAACTATCAGGCCCTATTCCGGTTCAGGTTTCCCAAATTCACATTCTAAACTATCTCAATGTCTCATGGAACCACCTAAACCAAAGTCTCCCCAAGGAACTTGGGGCCATCAAGGGCTTGACTTCAGCAGATTTTTCTCACAATGACTTCTCTGGCTCAATACCAGAGGAGGGGCAATTCTCAGTGTTTAACTATACATCCTTCATGGGAAATCCTCAGCTCTGTGGATATGAGTTGAATCCATGTAACCATTCTTCAAATGCAGTGTTGGAGTCTCAAGACAGTGGCAGTGCAAAACCTGGAGTTCCAGGTAAGTACAAGCTTCTCTTTGCAGTGGCACTTTTGGCTTGTTCATTGGCATTTGCAACCTTGGCCTTTATCAAGAGCAGAAAGCAAAGGAGGCACTCCAATTCATGGAAGCTCACAGCATTTCAGAATCTGGAGTATGGAAGTGAAGACATCATAGGGTGCATAAAGGAAAGCAATGTCATAGGAAGGGGAGGGGCTGGTGTTGTATACCATGGAACCATGCCTAATGGAGAGCAAGTAGCTGTGAAGAAGCTTTTGGGAATCAACAAAGGGTGTTCTCATGATAATGGCCTCTCTGCAGAAATAAGGACGCTGGGAAGGATCAGGCACAGGTACATTGTGAGGTTGCTGGCATTTTGCTCAAATAGAGAGACCAATTTACTTGTTTATGAGTACATGACAAATGGAAGCTTGGGAGAGGTTTTGCATGGGAAAAGGGGAGAGTTTCTCAAGTGGGATACTAGGCTGAAAATAGCAATAGAAGCTGCAAAAGGGCTTTGCTATCTGCATCATGATTGCTCCCCTCTCATAATCCACAGAGATGTTAAGTCAAACAACATATTGTTGAACTCTGAATTTGAGGCTCATGTTGCTGATTTTGGACTTGCCAAGTTCTTGCAAGATACTGGGACATCAGAGTGTATGTCTTCCATTGCTGGTTCTTATGGTTACATAGCTCCAGAATATGCATACACATTAAAAGTTGATGAGAAAAGTGATGTGTATAGCTTTGGAGTGGTGCTGCTAGAACTATTGACTGGAAGAAGACCAGTAGGGAATTTTGGTGAAGAGGGACTAGACATAGTTCAATGGACCAAGTTGCAAACAAATTGGAGCAAAGACAGAGTGGTTAAGATTCTTGATGAGAGGCTATGTCACATTCCCTTAGATGAAGCAAAGCAGGTATACTTTGTGGCCATGCTGTGTGTTCAGGAACAAAGCGTGGAAAGACCAACCATGAGGGAAGTGGTGGAAATGCTTGCACAAGCAAAGCAACCAAACGCATTTCAAAAGCAGTGA 2985 0.4318 MGTPTPTPTTTTTLSLVLILLLLCLVWPCSSASSLPMSLRRQASILVSLKQDFEANTESLSTWDMSNYMSVCTWKGIECDQKNRSVVSLDISNLNLSGTLSPAITGLRSLVSLSLEGNGFSGGFPSDVHRLEGLRFLNISVNMFSGGMSWEFSHLRELEVLDAYDNEFNCSLPLGVIELPKLNSLNFGGNYFYGEIPPSYGDMVQLNFLSLAGNDLRGVIPAELGNLTNLTQLFLGYYNQFDGGIPPQFGKLVNLVHLDLANCGLTGTIPPELGNLKKLDTLFLQTNQLSGSIPPQIGNMSGLKCLDLSNNELTGDIPNEFSGLHELTLLNLFINRLHGEIPPFIAELPKLEVLKLWQNNFTGTIPSKLGQNGKLAELDLSTNKLTGLVPKSLCLGRRLRILILLNNFLFGSLPADLGQCYSLQRVRLGQNYLTGPIPNGFLYLPELSLLELQNNYLSGWLPQETSTTPSKLGQLNLSNNRLSGSLPASIGNFPNMQILLLHGNRISGEIPPDIGRLKNILKLDMSVNNFSGSIPPEIGNCLLLTYLDLSQNQLSGPIPVQVSQIHILNYLNVSWNHLNQSLPKELGAIKGLTSADFSHNDFSGSIPEEGQFSVFNYTSFMGNPQLCGYELNPCNHSSNAVLESQDSGSAKPGVPGKYKLLFAVALLACSLAFATLAFIKSRKQRRHSNSWKLTAFQNLEYGSEDIIGCIKESNVIGRGGAGVVYHGTMPNGEQVAVKKLLGINKGCSHDNGLSAEIRTLGRIRHRYIVRLLAFCSNRETNLLVYEYMTNGSLGEVLHGKRGEFLKWDTRLKIAIEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSEFEAHVADFGLAKFLQDTGTSECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELLTGRRPVGNFGEEGLDIVQWTKLQTNWSKDRVVKILDERLCHIPLDEAKQVYFVAMLCVQEQSVERPTMREVVEMLAQAKQPNAFQKQ 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01835 994 Gene3D Ribonuclease Inhibitor 297 372 IPR032675 -
Cca05g01835 994 Gene3D Phosphorylase Kinase; domain 1 679 787 - -
Cca05g01835 994 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 16 991 - -
Cca05g01835 994 Gene3D Ribonuclease Inhibitor 196 296 IPR032675 -
Cca05g01835 994 Pfam Leucine rich repeat 278 337 IPR001611 GO:0005515
Cca05g01835 994 Gene3D Transferase(Phosphotransferase) domain 1 788 994 - -
Cca05g01835 994 SUPERFAMILY L domain-like 317 636 - -
Cca05g01835 994 Pfam Leucine rich repeat N-terminal domain 42 80 IPR013210 -
Cca05g01835 994 SMART LRR_typ_2 373 395 IPR003591 -
Cca05g01835 994 SMART LRR_typ_2 300 323 IPR003591 -
Cca05g01835 994 SMART LRR_typ_2 493 517 IPR003591 -
Cca05g01835 994 SMART LRR_typ_2 444 468 IPR003591 -
Cca05g01835 994 SMART LRR_typ_2 203 227 IPR003591 -
Cca05g01835 994 SMART LRR_typ_2 348 372 IPR003591 -
Cca05g01835 994 SMART LRR_typ_2 252 276 IPR003591 -
Cca05g01835 994 ProSiteProfiles Protein kinase domain profile. 710 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01835 994 SUPERFAMILY L domain-like 68 390 - -
Cca05g01835 994 PANTHER UNNAMED PRODUCT 16 991 - -
Cca05g01835 994 ProSitePatterns Serine/Threonine protein kinases active-site signature. 832 844 IPR008271 GO:0004672|GO:0006468
Cca05g01835 994 SUPERFAMILY Protein kinase-like (PK-like) 704 982 IPR011009 -
Cca05g01835 994 Pfam Leucine Rich Repeat 254 276 IPR001611 GO:0005515
Cca05g01835 994 Pfam Protein tyrosine and serine/threonine kinase 712 982 IPR001245 GO:0004672|GO:0006468
Cca05g01835 994 Gene3D Ribonuclease Inhibitor 373 638 IPR032675 -
Cca05g01835 994 SMART serkin_6 710 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01835 994 Gene3D Ribonuclease Inhibitor 39 195 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01835 Cca-Chr5 38141005 38145896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01835 32 984 Receptor kinase-like Gene Family AT5G65700 58.412 0.0 1104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca05g01835 PK_Tyr_Ser-Thr 6.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01835 - - gmx:100816158 1795.4