Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01829 atgtcgcggactggtagaatggcttcggatcttagcagaaccggtcctgtggaaagagacattgagcaggccattactgctttaaagaaaggggcctgcttgctcaagtatggaagaaggggaaagcccaagttttgccccttccgtctttccaatgacgaatctgttttgatatggttctcagggaaagaagagaagcaccttaaactgagtcatgtctctagaattatatctggacaacggacaCCTATCTTTCAGAGATATCCACGACCTGAGAAAGAATACCAGTCATTTTCTCTTATCTACAATGATAGGTCTCTGGACTTGATATGCAAGGATAAAGATGAAGCTGAAGTTTGGTTCAGTGGTTTAAAAGCATTAATTTCTCGTAGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGATAGTATTCCATCTGAGGCTAATAGTCCTCGAACATACACTAGAAGGAGTTCTCCCTTAAATTCTCCCTTTGGCAGTAATGAAAGCCTGCAAAAGGATAGTGGGGATCACCTTCGCCTTCATAGCCCATATGAGAGCCCCCCTAAGAATGGTTTGGATAAAGCATTAGATGTGGTTTTGTATGCTGTCCCCCAAAAGGGTTTCTTCCCTCCAGATTCTGCCAGTGCTTCAGTACATTCTGTGTCATCTGGAGGATCAGACAGTATGCATGGTCATATGAAGACAATGGGTATGGATGCTTTTAGAGTTAGTCTATCTAGTGCTGTTAGCACATCCAGCCAAGGTTCTGGTCATGATGATGGTGATGCTCTAGGGGATGTTTTCATTTGGGGAGAAGGCACAGGTGATGGTATTCTGGGTGGTGGGAAATACCGAGTTGGGAATTGTTTGGGTGCAAAAATGGATTCTCTATTTCCCAAAGCCTTGGAATCTGCTGTAGTTCTTGATGTACAGAATATTGCTTGTGGTGGACGACATGCGGCCATAGTGACTAAACAAGGTGAAATTTTCTCCTGGGGGGAGGAATCAGGTGGAAGACTAGGGCACGGTGTTGACTCTGATGTTCTCCATCCAAAGCTTATAGAAGCTTTAAGTAATACAAATATTGAACTTGTAGCTTGCGGGGAATATCATACTTGTGCTGTGACACTTTCTGGTGATCTTTATACATGGGGTAATGGCACATACAATTATGGCCTTCTAGGACATGGAAATCAAGTGAGCCACTGGGTACCAAAAAGAGTAAATGGCCCCTTAGAAGGCATACATGTTTCATATATTTCTTGTGGACCATGGCACACTGCTGTTGTAACATCTGCTGGTCAATTATTTACTTTTGGTGATGGTACATTTGGTGCTTTGGGTCATGGAGACCGAAAAAGCGTTTCATTACCAAGGGAAGTAGAATCCCTCAAGGGTCTTCGTACTGTGCGTGCTGCATGTGGTGTTTGGCATACTGCTGCAGTTGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGTAACTGTTCTTCGGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGATAAGGAAGCAAAACTTGTTCCAACCTGTGTTGCCCTCATTGAACCCAATTTTTGTCAAGTTGCTTGTGGACATAGTCTCACTGTAGCACTTACCACTTCTGGCCATGTCTATACAATGGGTAGTCCTGTCTATGGCCAGTTAGGAAATCCTCAAGGTGATGGGAAGTTGCCAACCCGTGTTGAAGGGAAATTGTCAAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGCAGTTTTAACTTCAAGGACTGAAGTTTACACTTGGGGGAAGGGTGCAAATGGCCGTTTAGGCCATGGCGATACAGATGATAGAAATACTCCAACATTAGTCGAAGCTCTGAAAGACAAAGATGTCAAAAGTATTGCTTGTGGAACTAATTTCACTGCAGCTATATGTCTGCATAAGTGGGTATCTGGTGTTGACCAGTCTATGTGTTCTGGCTGTCGAATGCCATTTAATTTCAAAAGAAAACGCCACAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCATGTAGCAGTAAGAAGTCTCTGAAGGCTTCAATGGCACCAAATCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTTAATAAAATTAGGAAAACCGTAGAAACTGATTCTTCATCTCATTCTTCTGTGAGCAGAAGAGGAAGTGTTAATCAGGGGTCTTTGGAGTTGATTGATAAGGATGATAAATTGGATTCCAGATCCCGTAATCAACTTGCCAGATTTTCTTCAATGGAATCCTTGAAACAAGTTGAAAGCAGATCTTCAAAGAAAAATAAGAAATTGGAATTCAACAGCAGCCGTGTCTCGCCTGTTCCAAATGGGGGTTCACAATGGGGAGCATTGAATATTACTAAATCTTTTAATCCTGTCTTTGGATCATCGAAGAAATTTTTCTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGAGCAACATCCCCAATATCTAGACGGCCTAGTCCACCTCGTTCAACTACACCAACCCCAACACTGGGAGGTCTCACATCCCCGAAGATAGTTGTGGATGATGCCAAGAGGACTAACGATAGCCTCAGTCAGGAGGTTATTAAATTAAGATCACAGGTGGAAAACCTGACTCGGAAGGCCCAACTTCAAGAAGATGAGTTGGAAAGAACAACTAAACAGCTAAAAGATGCAATAGCAATTGCCGGGGAAGAAACTGCCAAATGTAAAGCAGCAAAGGAAGTAATAAAGTCACTTAATGCCCAGTTGAAGGACATGGCTGAAAGGCTACCTGTTGGAGCTGCTAGGAATGTCAAATCACCGTCTCTTGCTTCTTTCGGTTCCAATCCTAGTTCCAATGATGTTAGCTATGCTTCCATTGATCGATTAAATATTCAAGCAACAAGCCCAGAGGCAGATTTAACTGGATCAAATAACCAGTTACTTTCAAATGGATCAAGCACAGTCAGTAGCCGTAGCACAGGTCACAATAAACAGAGCCAATCAGATTCAATTAATAGAAATGGGAGCAGAACTAAGGACAGCGAATCCCGTAATGAATCCGAACGGGTTGAGCAAGATGAGCCTGGTGTATATATTACACTCACCTCCCTTCCAGGAGGTGTAATAGATCTTAAGAGAGTTCGCTTTAGTCGGAAACGGTTCAGTGAGAAGCAAGCAGAGCAATGGTGGGCTGAAAATCGTGCAAGAGTATATGAACGGTACAATGTGCGCATGATAGACAAGTCTTCTGTTGGTGTTGGGAGTGAAGACCTGGCTCATTGA 3321 0.3966 MSRTGRMASDLSRTGPVERDIEQAITALKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDSIPSEANSPRTYTRRSSPLNSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKALDVVLYAVPQKGFFPPDSASASVHSVSSGGSDSMHGHMKTMGMDAFRVSLSSAVSTSSQGSGHDDGDALGDVFIWGEGTGDGILGGGKYRVGNCLGAKMDSLFPKALESAVVLDVQNIACGGRHAAIVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIEALSNTNIELVACGEYHTCAVTLSGDLYTWGNGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGALGHGDRKSVSLPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVALIEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQGDGKLPTRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNTPTLVEALKDKDVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRMPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKIRKTVETDSSSHSSVSRRGSVNQGSLELIDKDDKLDSRSRNQLARFSSMESLKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNITKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDSLSQEVIKLRSQVENLTRKAQLQEDELERTTKQLKDAIAIAGEETAKCKAAKEVIKSLNAQLKDMAERLPVGAARNVKSPSLASFGSNPSSNDVSYASIDRLNIQATSPEADLTGSNNQLLSNGSSTVSSRSTGHNKQSQSDSINRNGSRTKDSESRNESERVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRARVYERYNVRMIDKSSVGVGSEDLAH 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01829 1106 SUPERFAMILY RCC1/BLIP-II 266 656 IPR009091 -
Cca05g01829 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 603 654 IPR000408 -
Cca05g01829 1106 MobiDBLite consensus disorder prediction 143 173 - -
Cca05g01829 1106 Pfam Pleckstrin homology domain 22 128 IPR001849 -
Cca05g01829 1106 PRINTS Chromosome condensation regulator RCC1 signature 312 325 IPR000408 -
Cca05g01829 1106 PRINTS Chromosome condensation regulator RCC1 signature 331 347 IPR000408 -
Cca05g01829 1106 PRINTS Chromosome condensation regulator RCC1 signature 381 397 IPR000408 -
Cca05g01829 1106 PRINTS Chromosome condensation regulator RCC1 signature 422 438 IPR000408 -
Cca05g01829 1106 PRINTS Chromosome condensation regulator RCC1 signature 438 452 IPR000408 -
Cca05g01829 1106 PRINTS Chromosome condensation regulator RCC1 signature 540 558 IPR000408 -
Cca05g01829 1106 PRINTS Chromosome condensation regulator RCC1 signature 598 619 IPR000408 -
Cca05g01829 1106 MobiDBLite consensus disorder prediction 833 862 - -
Cca05g01829 1106 Pfam FYVE zinc finger 655 721 IPR000306 GO:0046872
Cca05g01829 1106 ProSiteProfiles BRX domain profile. 1033 1088 IPR013591 -
Cca05g01829 1106 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 474 484 IPR000408 -
Cca05g01829 1106 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 21 1092 - -
Cca05g01829 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 551 602 IPR000408 -
Cca05g01829 1106 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 659 721 IPR017455 -
Cca05g01829 1106 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 668 728 IPR013083 -
Cca05g01829 1106 MobiDBLite consensus disorder prediction 727 803 - -
Cca05g01829 1106 Gene3D - 20 137 IPR011993 -
Cca05g01829 1106 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 21 1092 - -
Cca05g01829 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 604 651 IPR000408 -
Cca05g01829 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 436 484 IPR000408 -
Cca05g01829 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 380 432 IPR000408 -
Cca05g01829 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 499 547 IPR000408 -
Cca05g01829 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 550 599 IPR000408 -
Cca05g01829 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 329 377 IPR000408 -
Cca05g01829 1106 SUPERFAMILY FYVE/PHD zinc finger 655 726 IPR011011 -
Cca05g01829 1106 Coils Coil 865 913 - -
Cca05g01829 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 329 380 IPR000408 -
Cca05g01829 1106 MobiDBLite consensus disorder prediction 981 1042 - -
Cca05g01829 1106 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 422 432 IPR000408 -
Cca05g01829 1106 SMART fyve_4 653 722 IPR000306 GO:0046872
Cca05g01829 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 267 328 IPR000408 -
Cca05g01829 1106 MobiDBLite consensus disorder prediction 214 233 - -
Cca05g01829 1106 CDD PH_PLC_plant-like 19 129 - -
Cca05g01829 1106 Pfam Transcription factor BRX N-terminal domain 916 949 IPR027988 -
Cca05g01829 1106 MobiDBLite consensus disorder prediction 137 191 - -
Cca05g01829 1106 MobiDBLite consensus disorder prediction 1021 1039 - -
Cca05g01829 1106 Pfam Transcription factor regulating root and shoot growth via Pin3 1032 1087 IPR013591 -
Cca05g01829 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 500 550 IPR000408 -
Cca05g01829 1106 MobiDBLite consensus disorder prediction 788 803 - -
Cca05g01829 1106 MobiDBLite consensus disorder prediction 727 742 - -
Cca05g01829 1106 CDD FYVE_like_SF 664 717 - -
Cca05g01829 1106 Gene3D - 498 667 IPR009091 -
Cca05g01829 1106 Gene3D - 233 497 IPR009091 -
Cca05g01829 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 381 435 IPR000408 -
Cca05g01829 1106 MobiDBLite consensus disorder prediction 981 1020 - -
Cca05g01829 1106 Pfam Unstructured region between BRX_N and BRX domain 957 1026 - -
Cca05g01829 1106 MobiDBLite consensus disorder prediction 217 231 - -
Cca05g01829 1106 SUPERFAMILY PH domain-like 20 128 - -
Cca05g01829 1106 Coils Coil 921 941 - -
Cca05g01829 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 436 487 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01829 Cca-Chr5 38070906 38077718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01829 925 1097 Major Intrinsic Protein MIP AT1G31880 31.551 1.83e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01829 - - gmx:100806439 2016.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01829 05 38070906 38077718 Cca05g01829 05 38070906 38077718 ECH