Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca05g01829 | atgtcgcggactggtagaatggcttcggatcttagcagaaccggtcctgtggaaagagacattgagcaggccattactgctttaaagaaaggggcctgcttgctcaagtatggaagaaggggaaagcccaagttttgccccttccgtctttccaatgacgaatctgttttgatatggttctcagggaaagaagagaagcaccttaaactgagtcatgtctctagaattatatctggacaacggacaCCTATCTTTCAGAGATATCCACGACCTGAGAAAGAATACCAGTCATTTTCTCTTATCTACAATGATAGGTCTCTGGACTTGATATGCAAGGATAAAGATGAAGCTGAAGTTTGGTTCAGTGGTTTAAAAGCATTAATTTCTCGTAGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGATAGTATTCCATCTGAGGCTAATAGTCCTCGAACATACACTAGAAGGAGTTCTCCCTTAAATTCTCCCTTTGGCAGTAATGAAAGCCTGCAAAAGGATAGTGGGGATCACCTTCGCCTTCATAGCCCATATGAGAGCCCCCCTAAGAATGGTTTGGATAAAGCATTAGATGTGGTTTTGTATGCTGTCCCCCAAAAGGGTTTCTTCCCTCCAGATTCTGCCAGTGCTTCAGTACATTCTGTGTCATCTGGAGGATCAGACAGTATGCATGGTCATATGAAGACAATGGGTATGGATGCTTTTAGAGTTAGTCTATCTAGTGCTGTTAGCACATCCAGCCAAGGTTCTGGTCATGATGATGGTGATGCTCTAGGGGATGTTTTCATTTGGGGAGAAGGCACAGGTGATGGTATTCTGGGTGGTGGGAAATACCGAGTTGGGAATTGTTTGGGTGCAAAAATGGATTCTCTATTTCCCAAAGCCTTGGAATCTGCTGTAGTTCTTGATGTACAGAATATTGCTTGTGGTGGACGACATGCGGCCATAGTGACTAAACAAGGTGAAATTTTCTCCTGGGGGGAGGAATCAGGTGGAAGACTAGGGCACGGTGTTGACTCTGATGTTCTCCATCCAAAGCTTATAGAAGCTTTAAGTAATACAAATATTGAACTTGTAGCTTGCGGGGAATATCATACTTGTGCTGTGACACTTTCTGGTGATCTTTATACATGGGGTAATGGCACATACAATTATGGCCTTCTAGGACATGGAAATCAAGTGAGCCACTGGGTACCAAAAAGAGTAAATGGCCCCTTAGAAGGCATACATGTTTCATATATTTCTTGTGGACCATGGCACACTGCTGTTGTAACATCTGCTGGTCAATTATTTACTTTTGGTGATGGTACATTTGGTGCTTTGGGTCATGGAGACCGAAAAAGCGTTTCATTACCAAGGGAAGTAGAATCCCTCAAGGGTCTTCGTACTGTGCGTGCTGCATGTGGTGTTTGGCATACTGCTGCAGTTGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGTAACTGTTCTTCGGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGATAAGGAAGCAAAACTTGTTCCAACCTGTGTTGCCCTCATTGAACCCAATTTTTGTCAAGTTGCTTGTGGACATAGTCTCACTGTAGCACTTACCACTTCTGGCCATGTCTATACAATGGGTAGTCCTGTCTATGGCCAGTTAGGAAATCCTCAAGGTGATGGGAAGTTGCCAACCCGTGTTGAAGGGAAATTGTCAAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGCAGTTTTAACTTCAAGGACTGAAGTTTACACTTGGGGGAAGGGTGCAAATGGCCGTTTAGGCCATGGCGATACAGATGATAGAAATACTCCAACATTAGTCGAAGCTCTGAAAGACAAAGATGTCAAAAGTATTGCTTGTGGAACTAATTTCACTGCAGCTATATGTCTGCATAAGTGGGTATCTGGTGTTGACCAGTCTATGTGTTCTGGCTGTCGAATGCCATTTAATTTCAAAAGAAAACGCCACAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCATGTAGCAGTAAGAAGTCTCTGAAGGCTTCAATGGCACCAAATCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTTAATAAAATTAGGAAAACCGTAGAAACTGATTCTTCATCTCATTCTTCTGTGAGCAGAAGAGGAAGTGTTAATCAGGGGTCTTTGGAGTTGATTGATAAGGATGATAAATTGGATTCCAGATCCCGTAATCAACTTGCCAGATTTTCTTCAATGGAATCCTTGAAACAAGTTGAAAGCAGATCTTCAAAGAAAAATAAGAAATTGGAATTCAACAGCAGCCGTGTCTCGCCTGTTCCAAATGGGGGTTCACAATGGGGAGCATTGAATATTACTAAATCTTTTAATCCTGTCTTTGGATCATCGAAGAAATTTTTCTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGAGCAACATCCCCAATATCTAGACGGCCTAGTCCACCTCGTTCAACTACACCAACCCCAACACTGGGAGGTCTCACATCCCCGAAGATAGTTGTGGATGATGCCAAGAGGACTAACGATAGCCTCAGTCAGGAGGTTATTAAATTAAGATCACAGGTGGAAAACCTGACTCGGAAGGCCCAACTTCAAGAAGATGAGTTGGAAAGAACAACTAAACAGCTAAAAGATGCAATAGCAATTGCCGGGGAAGAAACTGCCAAATGTAAAGCAGCAAAGGAAGTAATAAAGTCACTTAATGCCCAGTTGAAGGACATGGCTGAAAGGCTACCTGTTGGAGCTGCTAGGAATGTCAAATCACCGTCTCTTGCTTCTTTCGGTTCCAATCCTAGTTCCAATGATGTTAGCTATGCTTCCATTGATCGATTAAATATTCAAGCAACAAGCCCAGAGGCAGATTTAACTGGATCAAATAACCAGTTACTTTCAAATGGATCAAGCACAGTCAGTAGCCGTAGCACAGGTCACAATAAACAGAGCCAATCAGATTCAATTAATAGAAATGGGAGCAGAACTAAGGACAGCGAATCCCGTAATGAATCCGAACGGGTTGAGCAAGATGAGCCTGGTGTATATATTACACTCACCTCCCTTCCAGGAGGTGTAATAGATCTTAAGAGAGTTCGCTTTAGTCGGAAACGGTTCAGTGAGAAGCAAGCAGAGCAATGGTGGGCTGAAAATCGTGCAAGAGTATATGAACGGTACAATGTGCGCATGATAGACAAGTCTTCTGTTGGTGTTGGGAGTGAAGACCTGGCTCATTGA | 3321 | 0.3966 | MSRTGRMASDLSRTGPVERDIEQAITALKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDSIPSEANSPRTYTRRSSPLNSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKALDVVLYAVPQKGFFPPDSASASVHSVSSGGSDSMHGHMKTMGMDAFRVSLSSAVSTSSQGSGHDDGDALGDVFIWGEGTGDGILGGGKYRVGNCLGAKMDSLFPKALESAVVLDVQNIACGGRHAAIVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIEALSNTNIELVACGEYHTCAVTLSGDLYTWGNGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGALGHGDRKSVSLPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVALIEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQGDGKLPTRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNTPTLVEALKDKDVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRMPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKIRKTVETDSSSHSSVSRRGSVNQGSLELIDKDDKLDSRSRNQLARFSSMESLKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNITKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDSLSQEVIKLRSQVENLTRKAQLQEDELERTTKQLKDAIAIAGEETAKCKAAKEVIKSLNAQLKDMAERLPVGAARNVKSPSLASFGSNPSSNDVSYASIDRLNIQATSPEADLTGSNNQLLSNGSSTVSSRSTGHNKQSQSDSINRNGSRTKDSESRNESERVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRARVYERYNVRMIDKSSVGVGSEDLAH | 1106 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca05g01829 | 1106 | SUPERFAMILY | RCC1/BLIP-II | 266 | 656 | IPR009091 | - | |
| Cca05g01829 | 1106 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 603 | 654 | IPR000408 | - | |
| Cca05g01829 | 1106 | MobiDBLite | consensus disorder prediction | 143 | 173 | - | - | |
| Cca05g01829 | 1106 | Pfam | Pleckstrin homology domain | 22 | 128 | IPR001849 | - | |
| Cca05g01829 | 1106 | PRINTS | Chromosome condensation regulator RCC1 signature | 312 | 325 | IPR000408 | - | |
| Cca05g01829 | 1106 | PRINTS | Chromosome condensation regulator RCC1 signature | 331 | 347 | IPR000408 | - | |
| Cca05g01829 | 1106 | PRINTS | Chromosome condensation regulator RCC1 signature | 381 | 397 | IPR000408 | - | |
| Cca05g01829 | 1106 | PRINTS | Chromosome condensation regulator RCC1 signature | 422 | 438 | IPR000408 | - | |
| Cca05g01829 | 1106 | PRINTS | Chromosome condensation regulator RCC1 signature | 438 | 452 | IPR000408 | - | |
| Cca05g01829 | 1106 | PRINTS | Chromosome condensation regulator RCC1 signature | 540 | 558 | IPR000408 | - |
Showing 1 to 10 of 54 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca05g01829 | - | - | gmx:100806439 | 2016.89 |
Showing 1 to 1 of 1 entries
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca05g01829 | 05 | 38070906 | 38077718 | Cca05g01829 | 05 | 38070906 | 38077718 | ECH |
Showing 1 to 1 of 1 entries