Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01828 ATGGAAGAATCAAGTGAATTGCAATCAGAAGAAAATAAAGTCTCCAATGAGAAAAATAAGAAAAGAAAACTGAAAACACCGGCCCAACTTTTGGCCTTGGAGAAATTTTATAATGAGAAAAAGTATCCCACAGAGGAAATGAAATCAGAACTTGCTGATGAGTTAGGATTGACAGAAAAGCAAATATCTGGATGGTTCTGCCACAgaaggttaaaagataaaagaatgatgaaagatgaaGCCGTTGCTAATGGACGGCAAGATCGTTCAAGCGGTGTCATCCAGGATCGTGGCAGTGGACTTGGGCAAGATTCATGTGGAAGCAGTAAACATGCTGATTACAGGTACTTGGATCCTAAGGAGGTTGAGAGCCATGGCCTCTACAATCACGAATTTTCAGTTGCAGATATGACTCATGGACGTAGGAGCCGTTATCCTGAAAATGTTAGCGGAGTGGATGAGACATCATCTGAGAGCAGCTCATATTTGCAAGAAAGGTTGTTTTCTCAAGGTCAGGATCCATATGATATGGAGCATTCTAGACATCTTACACCTAATGGAGCTCTTCCACCTCTAAATCCCAAAGGTGCCCTTAACATGGGATATAAACCATCAGGATATTTAAAAGTGAAGGGAGAGATAGAACATGCTGCTATAACTGCTGTTAAGAAGCAATTAGGAAGGCATTATCTGGAAGATGGTCCAGTACTTGGTATAGAGTTTGACACACTTCCTCCAGGGGCATTTGAGTGCCAAACTGCAGATCCAGCTAATGAACCATACTGTGTTGCAAATCCTCCACTTCCGAATTCTCCAGAAATCTCTGCTGCAAAAAGACAACCCAGTCATAGCTCTAGATATGATTCATATTATACTAAATTTAGTTCCCAAGATTCACATATGGAAGGAGCTGACTTTGGCTCCTTGCATGAATCTGATTTCCAGGATAAACAAGATAAGAAAGCCCGCCAGAATATAAAACAAAGGCAAGCTTTCTACGGTTATACCAATCATTTTCCTGGAAGGAACTCTTTCTCAGATTTGTATGAAGACTCTACTGGAGAAGCATCTGGTTATAATAGCACTAAGAATCATAGAATGAGCACTAAGCAAGGTGTTGAGGGGATGAGATCTGATTCTGCTTCTAACCATAGTGATCACTATGAAGAGAAGAAGGTTGCAGTTAAGCATAAAGAATTGATGCTGCATGGTTATGATAACATCAATCCAAAGAATATACAAAGGAGCGAACATGTAAAATCTAAACCTTCTGGTTCAATGCGTAAATCCCGTGTTCCTGTGGATACTGAAGAAAGGGGGTTATCTGCTAGGATGGCAAAGGAAGATATGATTAAGGGGGACAGGAAAGCAAAAAATGCATACCGTGATGGAGATGGAGCAGGGATGCTTTCAAATGAAATCATGGTTGCAAAACGAGCTAAAGTTGACCCGCTTCAACAATACCATGTGAAACAAACACCTCTTGCTGAGATGGAACCAAGGAAAATTCAGAGATTTTTGAAAGGCATGAtgagcaatcaggcagttggggagccctcccttaaaagctag 1572 0.3887 MEESSELQSEENKVSNEKNKKRKLKTPAQLLALEKFYNEKKYPTEEMKSELADELGLTEKQISGWFCHRRLKDKRMMKDEAVANGRQDRSSGVIQDRGSGLGQDSCGSSKHADYRYLDPKEVESHGLYNHEFSVADMTHGRRSRYPENVSGVDETSSESSSYLQERLFSQGQDPYDMEHSRHLTPNGALPPLNPKGALNMGYKPSGYLKVKGEIEHAAITAVKKQLGRHYLEDGPVLGIEFDTLPPGAFECQTADPANEPYCVANPPLPNSPEISAAKRQPSHSSRYDSYYTKFSSQDSHMEGADFGSLHESDFQDKQDKKARQNIKQRQAFYGYTNHFPGRNSFSDLYEDSTGEASGYNSTKNHRMSTKQGVEGMRSDSASNHSDHYEEKKVAVKHKELMLHGYDNINPKNIQRSEHVKSKPSGSMRKSRVPVDTEERGLSARMAKEDMIKGDRKAKNAYRDGDGAGMLSNEIMVAKRAKVDPLQQYHVKQTPLAEMEPRKIQRFLKGMMSNQAVGEPSLKS 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01828 523 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 505 - -
Cca05g01828 523 SMART HOX_1 18 80 IPR001356 GO:0003677
Cca05g01828 523 Gene3D - 8 92 - -
Cca05g01828 523 SUPERFAMILY Homeodomain-like 18 84 IPR009057 -
Cca05g01828 523 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Cca05g01828 523 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Cca05g01828 523 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 505 - -
Cca05g01828 523 MobiDBLite consensus disorder prediction 7 26 - -
Cca05g01828 523 MobiDBLite consensus disorder prediction 1 26 - -
Cca05g01828 523 MobiDBLite consensus disorder prediction 88 106 - -
Cca05g01828 523 CDD homeodomain 20 77 IPR001356 GO:0003677
Cca05g01828 523 MobiDBLite consensus disorder prediction 81 109 - -
Cca05g01828 523 MobiDBLite consensus disorder prediction 417 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01828 Cca-Chr5 38052500 38059457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01828 3 504 Homeobox Transcription Factor Family AT4G03250 40.655 1.24e-82 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Cca05g01828 Homeodomain 3.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01828 - - gmx:100803515 872.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01828 05 38052500 38059457 Cca05g01828 05 38052500 38059457 ECH