Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01825 ATGTGGTCCGGCGCAACTAGGTCAATCAATTACCCTGAGATGGGCATGTTCGTGGTGGCGCCAGCTTCGTCCTTCCACCACCACCACCAACAGATACCGCCCCCGCACGACCCCGTGGTGGCGGATTCCCTCAACCCCGCCACTGCACTTGGGGTCGGCGTCAGCGTCATCCCCCTCCTCGCAGCCACGCCGTGTCTGGAATCCGACAACATCCTCGGCAATAGGACACGTGGCGGGGGAATTCAGTTTTGGCAAGAGCCACAACCGCCACAACCGCACCAAGGGCACTACATGAAGAAGCAGCACCAGGATCTTCTCAACCACAACAACAACAATAGTAGCCCTGGGAATTTGCTTCAGAACAGTGGAGGCGTAACCGGTTCCGGAACCAGCAGTGGCGGAACTACCACGTGCCAAGATTGTGGGAACCAGGCGAAGAAAGATTGCGTCAATAGAAGGTGCAGGACTTGTTGCAAAAGCCGAGGTTTTGATTGCCCTACTCATGTTAAGAGTACATGGGTCCCCGCCGCACGCCGGAGAGAGCGCCAGCTGATGACGGCGGCAACCGCTGCTGTTGCTGGTTCTAGTGGCTCCACCTCAGGCACCAAAAAACCTAGGCTCATTGCTTCACAAACAACAACTTCTCATACTTCCACTTCCAACACCACTCCTCCTAGAAGCTTTGACACTAGCTCTAGCCATCAAGATGCGGGTTTTAAGGAGTCTCTACCGGGGCAAGTACGTGCACCAGCGGTTTTCAAGTGTGTGAGAGTGACGGCGGTGGAGGATGGGCAAGATGAGTATGCGTATCAGGCTGTGGTGAAGATTGGTGGCCACGTGTTCAAAGGGTTTCTCTATGATCAAGGGGTGGAGAATAGGGATGTGTATCCTAATCTATCTGAGTTGCATTTGGGTGgtggaagtggaagcggaggaagtggtggtagaaatggGGTTTCATCTTCTTCTCCGATGATGGATCCTTCTGATGTTTATGGTGGAGGGTTACTAGGTGGTTCTTCAGCCTATGGTAATCCAATGAATTGA 1047 0.5167 MWSGATRSINYPEMGMFVVAPASSFHHHHQQIPPPHDPVVADSLNPATALGVGVSVIPLLAATPCLESDNILGNRTRGGGIQFWQEPQPPQPHQGHYMKKQHQDLLNHNNNNSSPGNLLQNSGGVTGSGTSSGGTTTCQDCGNQAKKDCVNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTAATAAVAGSSGSTSGTKKPRLIASQTTTSHTSTSNTTPPRSFDTSSSHQDAGFKESLPGQVRAPAVFKCVRVTAVEDGQDEYAYQAVVKIGGHVFKGFLYDQGVENRDVYPNLSELHLGGGSGSGGSGGRNGVSSSSPMMDPSDVYGGGLLGGSSAYGNPMN 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01825 348 Pfam Domain of unknown function (DUF702) 135 291 - -
Cca05g01825 348 MobiDBLite consensus disorder prediction 305 331 - -
Cca05g01825 348 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 13 348 IPR007818 GO:0003700|GO:0006355
Cca05g01825 348 MobiDBLite consensus disorder prediction 186 243 - -
Cca05g01825 348 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 13 348 - -
Cca05g01825 348 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 137 179 IPR006510 -
Cca05g01825 348 MobiDBLite consensus disorder prediction 313 327 - -
Cca05g01825 348 MobiDBLite consensus disorder prediction 189 239 - -
Cca05g01825 348 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 243 290 IPR006511 -
Cca05g01825 348 MobiDBLite consensus disorder prediction 105 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01825 Cca-Chr5 37972402 37973673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01825 13 331 C2H2 Transcription Factor Family AT5G12330 53.116 3.23e-85 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Cca05g01825 DUF702 8.4e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01825 - - gsj:114385228 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01825 05 37972402 37973673 Cca05g01825 05 37972402 37973673 ECH