Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01822 ATGGCAAATAATGTCCGTGCACCTTTCCTTTTTGcagcaccactatcattgtcaccaccaacaacaccaccaccaccaccatcaccgccattaacacctaccCTTGACACCTCTAGTGATTTAGATGAATATCCTGAAGAATCTAATAAGCAAGTTCAACCACAACCTACCATGGTTGCACTTGATAAGAGGCCCAAGGGGAGGCCATCTGGCTCAAAGAATAAGCCCAAATCAGCCATGGACATGTTCAAACCCATAATCTTGATAATTTCAACTGGCATGAACATTATCGATGCCATCATCGACTTTAGTCACAAGAAGGATGTCAGCATCGCTGTGCACCATGCTTCGGGTGCCATATCTGAGGTTAACATTTTCAACCCTTTACCCCCTTCTAATTGTTGGTCCTTTCAAGGAAACTTGCATATGTTTTATCTCTCAGGCTTTTATACCAAAAGCATTTCACCTTTTCCCCCTAACAACGTTCCTTATTCCTCCTTTAACATTCAATTCTCAATGGATTGGGTCCACCAAACCTTTGGTGGCCTTGTCGGACGCAAGTTGATTGCTGCGGAACCTGTGCATGTCTTTGCTTCTATCTTCAAGGAGAACGAGTGTGAAGGGGTGGTGAATCCTATCGCAAATCCAAATGTTCAATCTGTTATGATGAGTACTCATGTTACCCATTGTGTTGCTGATGCTTTTGTTGCCAACACTGACAACACAGTCTATCACCCTAGTTTCTCTATTGGAGCTTCAACCTCATCATCTTCAATGAATGACCAACCTCTTGATGCTTCTCCTGGAGATGTGAACATGCTTTATTGGAACGACCCCACCAACTAG 846 0.3948 MANNVRAPFLFAAPLSLSPPTTPPPPPSPPLTPTLDTSSDLDEYPEESNKQVQPQPTMVALDKRPKGRPSGSKNKPKSAMDMFKPIILIISTGMNIIDAIIDFSHKKDVSIAVHHASGAISEVNIFNPLPPSNCWSFQGNLHMFYLSGFYTKSISPFPPNNVPYSSFNIQFSMDWVHQTFGGLVGRKLIAAEPVHVFASIFKENECEGVVNPIANPNVQSVMMSTHVTHCVADAFVANTDNTVYHPSFSIGASTSSSSMNDQPLDASPGDVNMLYWNDPTN 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01822 281 Gene3D - 84 221 - -
Cca05g01822 281 MobiDBLite consensus disorder prediction 14 78 - -
Cca05g01822 281 Pfam Plants and Prokaryotes Conserved (PCC) domain 84 202 IPR005175 -
Cca05g01822 281 SUPERFAMILY AF0104/ALDC/Ptd012-like 81 212 - -
Cca05g01822 281 ProSiteProfiles PPC domain profile profile. 77 222 IPR005175 -
Cca05g01822 281 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 34 238 - -
Cca05g01822 281 MobiDBLite consensus disorder prediction 17 33 - -
Cca05g01822 281 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 238 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01822 Cca-Chr5 37925134 37926193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01822 59 201 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 29.677 4.30e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01822 - - ccaj:109792018 526.168