Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01813 ATGGGCAATTGTTGCTCAGGTGGCACCAATGACCCTGAGAACAAGGGAGAATCCAACCCACCAAACCACGAGGGTGGTGCAAGTGCGACTACCCCACCACCCTCATCCAAGCCAGCCTCTCATCATCCTGGCAAGCACTCAAAGCCAGCCCCGATCGGACCAGTGCTTGGAAGGCCGATGGAGGACGTGAGGAGCAGCTACAGCATGGGGAAAGAGCTAGGGAGAGGGCAGTTTGGTGTGACACATTTGTGCACACAGAAGAGCACAGGGAAGCAATATGCATGCAAGACCATAGCCAAGAGGAAGCTGGTGAACAAGGAGGATATAGATGATGTGAAGAGGGAGGTGCAGATCATGCACCATCTCTCAGGCCAGCCTAACATTGTGGAGCTTGTTAATGTGTATGAGGATAAGCAATCTGTTCATTTGGTCATGGAGTTGTGTGCTGGAGGGGAGCTCTTTGATCGCATCATTGCCAAGGGACATTACACTGAACGTGCTGCAGCTTCATTGTTGAGAACCATTGTTCAGATTGTCCACACCTGCCATTCCATGGGGGTCATTCATAGAGATCTCAAGCCTGAGAATTTCCTCTTGTTGAACAAAGATGAGAATGCACCTCTCAAGGCCACTGATTTTGGTCTCTCAGTTTTCTACAAGCAAGGAGAGGTGTTTAAAGACATTGTTGGCAGTGCATATTACATTGCTCCAGAGGTGTTGAAGAGAAGATATGGGCCAGAAGTTGACATATGGAGTATTGGTGTTATGTTATACATTCTTCTATGTGGTGTTCCTCCATTTTGGGCAGAATCCGAAAATGGGATATTCAATGCAATACTACGAGGCCATATTGACTTTACTAGCGATCCATGGCCTTCCATTTCACCTCAAGCGAAGGATCTTGTAAGGAAAATGTTGAATTCAGATCCCAGGCAGAGGCTTACGGCTCACGAAGTTCTGAATCATCCATGGATCAAGGAGGATGGAGAAGCACCAGATGTTCCTCTTGACAACGCAGTGCTGAATAGACTGAAACAGTTCAGAGCAATGAACGAGTTCAAGAAAGTTGCTCTAAGGGTCATCGCGGGTTGCCTGTCAGAGGAAGAAATAATGGGATTGAAGCAGATGTTTAAGGGAATGGATACTGACAACAGTGGAACCATTACAATTGAAGAGCTCAAGCAAGGTCTTGCAAAACAAGGGACTAAGCTTACAGAACAAGAAGTTAAGCAATTAATGGAAGCTGCAGATGCTGATGGCAATGGAACCATAGATTATGATGAATTCATTACAGCAACAATGCACATGAACCGAATGAACAAAGAAGATCATCTTTATACTGCCTTCCAATACTTCGATAAAGATAACAGCGGGTACATTACAATTGAAGAACTAGAGCAGGCTCTCCATGAGTTTAACATGCACGATGGCAGGGACATCAAGGAAATCATTTCAGAAGTTGATGCAGATAATGATGGTCGGATTAACTATGACGAGTTTGCTGCAATGATGAACAAAGGAAACCTAGAAGTTAATACAAAGAAGAGGCGTGATTCAAGCTTATATTAA 1569 0.45 MGNCCSGGTNDPENKGESNPPNHEGGASATTPPPSSKPASHHPGKHSKPAPIGPVLGRPMEDVRSSYSMGKELGRGQFGVTHLCTQKSTGKQYACKTIAKRKLVNKEDIDDVKREVQIMHHLSGQPNIVELVNVYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTCHSMGVIHRDLKPENFLLLNKDENAPLKATDFGLSVFYKQGEVFKDIVGSAYYIAPEVLKRRYGPEVDIWSIGVMLYILLCGVPPFWAESENGIFNAILRGHIDFTSDPWPSISPQAKDLVRKMLNSDPRQRLTAHEVLNHPWIKEDGEAPDVPLDNAVLNRLKQFRAMNEFKKVALRVIAGCLSEEEIMGLKQMFKGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLMEAADADGNGTIDYDEFITATMHMNRMNKEDHLYTAFQYFDKDNSGYITIEELEQALHEFNMHDGRDIKEIISEVDADNDGRINYDEFAAMMNKGNLEVNTKKRRDSSLY 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01813 522 Pfam Protein kinase domain 67 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01813 522 SUPERFAMILY EF-hand 365 509 IPR011992 -
Cca05g01813 522 Gene3D Transferase(Phosphotransferase) domain 1 153 334 - -
Cca05g01813 522 ProSiteProfiles EF-hand calcium-binding domain profile. 404 439 IPR002048 GO:0005509
Cca05g01813 522 SMART efh_1 372 400 IPR002048 GO:0005509
Cca05g01813 522 SMART efh_1 444 472 IPR002048 GO:0005509
Cca05g01813 522 SMART efh_1 408 436 IPR002048 GO:0005509
Cca05g01813 522 SMART efh_1 479 507 IPR002048 GO:0005509
Cca05g01813 522 ProSitePatterns EF-hand calcium-binding domain. 417 429 IPR018247 -
Cca05g01813 522 Gene3D - 335 509 - -
Cca05g01813 522 SMART serkin_6 67 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01813 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Cca05g01813 522 MobiDBLite consensus disorder prediction 1 35 - -
Cca05g01813 522 ProSitePatterns Protein kinases ATP-binding region signature. 73 100 IPR017441 GO:0005524
Cca05g01813 522 SUPERFAMILY Protein kinase-like (PK-like) 51 351 IPR011009 -
Cca05g01813 522 ProSiteProfiles Protein kinase domain profile. 67 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01813 522 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 16 513 - -
Cca05g01813 522 ProSitePatterns EF-hand calcium-binding domain. 488 500 IPR018247 -
Cca05g01813 522 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 513 - -
Cca05g01813 522 ProSitePatterns EF-hand calcium-binding domain. 381 393 IPR018247 -
Cca05g01813 522 Pfam EF-hand domain pair 373 433 IPR002048 GO:0005509
Cca05g01813 522 Pfam EF-hand domain pair 443 504 IPR002048 GO:0005509
Cca05g01813 522 ProSiteProfiles EF-hand calcium-binding domain profile. 479 510 IPR002048 GO:0005509
Cca05g01813 522 MobiDBLite consensus disorder prediction 1 61 - -
Cca05g01813 522 Gene3D Phosphorylase Kinase; domain 1 69 152 - -
Cca05g01813 522 ProSiteProfiles EF-hand calcium-binding domain profile. 440 475 IPR002048 GO:0005509
Cca05g01813 522 CDD STKc_CAMK 67 324 - -
Cca05g01813 522 ProSiteProfiles EF-hand calcium-binding domain profile. 368 403 IPR002048 GO:0005509
Cca05g01813 522 ProSitePatterns EF-hand calcium-binding domain. 453 465 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01813 Cca-Chr5 37786539 37789629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01813 1 521 EF-hand Containing Proteins AT5G12180 81.214 0.0 897
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca05g01813 Pkinase 3.1e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01813 K13412 - gmx:100820422 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01813 05 37786539 37789629 Cca05g01813 05 37786539 37789629 ECH