Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01812 ATGGCGGCTATCAGTCTGAGGAAGGGGAACACGCGCCTGCCGCCGGAGGTGAACCGCGTGCTGTACGTTCGCAACCTTCCCTTCAACATCACCAGCGAGGAGATGTACGACATCTTCGGCAAATACGGCGCGATTCGCCAGATCCGCATCGGAACCAACAAGGACACTCGCGGAACGGCGTTCGTCGTCTACGAGGACATCTACGACGCCAAGACCGCCGTCGATCACCTCTCCGGCTTCAACGTCGCCAACCGTTACCTGATTGTGCTGTATTACCAGCAGGCTAAGATGAGCAAGAAGTTCGATCAGAAGAAGAAGGAGGACGAGATCGCGCGTATGCAGGAGAAGTACGGTGTTTCCACCAAAGATAAGTACTTAAATCCGGTGTTTGTGAAGAATTGCCTTGGGTTCAACATAGTGATTCTTATTACCTTGGTCCGTCTTGTATCATATGCATCTCAGATTTATACTTGA 474 0.5169 MAAISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVSTKDKYLNPVFVKNCLGFNIVILITLVRLVSYASQIYT 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01812 157 SMART rrm1_1 20 90 IPR000504 GO:0003723
Cca05g01812 157 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 87 IPR000504 GO:0003723
Cca05g01812 157 CDD RRM_SF3B14 17 93 IPR034150 -
Cca05g01812 157 PANTHER SPLICING FACTOR 3B SUBUNIT 6 5 116 - -
Cca05g01812 157 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 94 IPR000504 GO:0003723
Cca05g01812 157 PANTHER SPLICING FACTOR 3B 5 116 - -
Cca05g01812 157 Gene3D - 15 122 IPR012677 -
Cca05g01812 157 SUPERFAMILY RNA-binding domain, RBD 7 101 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01812 Cca-Chr5 37784697 37786403 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01812 7 127 Eukaryotic Initiation Factors Gene Family AT1G22760 27.419 3.46e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01812 K12833 - gmx:100802877 249.21