Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01807 ATGGCTTTCACACTAGACAGGTGTGATGATAACATGGTGTTCACTATggagtctcagaagtcagtgccagctcccttcctgacaaagacataccaacttgttgatgacccttgcactgaccacattgtgtcttggggtgatgatgaaaccacatttgttgtgaggaggcccccagagtttgctagagatcttcttcccaactatttcaagcacaacaacttctcaagctttgttaggcaactaaacacctatGGTTTCAAGAAAGTAGCAGCTGATAGGTGGGAGTTTGCAAATGAATACTTTAGAAAAGGAGCAAAGCACCTTCTATGTGAAATCCACAGGAGGAAAACCCCTCACCACTATCAACAACACTACCACATGCATGACCATCCACCATCACAGCTTCTTCAGCCAGAAGAGAATCTGTGTTGGATTGATGCTCCTCCTTTACCATCTCCTAAACCAGGCACTGATATCCTCACAGCACTTTCTGAAGACAACCAAAGGCTGAGGAGAAAGAACTTCATGCTCCTATCAGAACTCACTCACATGAAGAATCTATACAATGACATCATATATTTCATCCAAAACCATGTGACTCCTGCTTCCTATGAACAAAGAAGCAGCAGTGCTATTTTGAAGCTGGTGGAATTGGATTCATCACCTCAATCACCAAATGTTGTTGTTAGACCAGCTAAGGGTCATGTTATGGAAAAGTCTTTGATGATAAGTTCTAGTGAAGAGGCTAATAGTTCTGTGAAGCTCTTTGGTGTTCCTCTTTGCGGCAAAAAGAGAGTGCACCCTGGTGACCTTGATCAACAATAG 825 0.3176 MAFTLDRCDDNMVFTMESQKSVPAPFLTKTYQLVDDPCTDHIVSWGDDETTFVVRRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVAADRWEFANEYFRKGAKHLLCEIHRRKTPHHYQQHYHMHDHPPSQLLQPEENLCWIDAPPLPSPKPGTDILTALSEDNQRLRRKNFMLLSELTHMKNLYNDIIYFIQNHVTPASYEQRSSSAILKLVELDSSPQSPNVVVRPAKGHVMEKSLMISSSEEANSSVKLFGVPLCGKKRVHPGDLDQQ 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01807 274 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca05g01807 274 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Cca05g01807 274 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca05g01807 274 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca05g01807 274 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca05g01807 274 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca05g01807 274 Gene3D - 18 117 IPR036388 -
Cca05g01807 274 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca05g01807 274 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 268 IPR027725 -
Cca05g01807 274 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-4B 10 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01807 Cca-Chr5 37749597 37751039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01807 20 209 HSF AT1G46264 62.617 1.89e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Cca05g01807 HSF_DNA-bind 5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01807 K09419 - gmx:100776060 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01807 05 37749597 37751039 Cca05g01807 05 37749597 37751039 ECH