Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01800 ATGAAACAGGGAAGAACCTCTTCTGGCCCCAtcttctcatgtcttcttcttttcttctgtctCTCAGGATCTGCTCAGGCTTACAAGAATTACACAGTGGGAGACTCTTTAGGCTGGTTTGACAACACTGAGAAATCCAGTGTCAATTACCAGAAGTGGGCTGACAGTAAAGAATTCAGTTTGGGAGATTTCCTCGTTTTCAACACTGATACTAACCACTCTGTGGTTCAGACATACAATGTCACCACATACAAACTATGTGACTACGATGATGCACAAGACAAGGACACAACACAATGGTCAGCATCTGATCCATCCAACACCCAGACACACCCTGTGACAGTGGCTGTTCCTTTGGTGAAGGAAGGGATGACGTACTTCTTTTCAGGTGACTATGATGGTGACCAATGCAAGAGTGGACAACACTTCAAAATTAATGTGACACATGGACAAGGGTTGCCCAAGAGTCTCAGAACTTCACCAGAAGATGCACCTTCTCCTGCTAGCCCTGTTGCTGGAGACGATGATTCAGCACCAGACACCATTGTCCCCTCCAATTTCAGCCACCCCAAGGAAGAAAGTGATGATGAAGATGACAAAGCTAGTGACAACAAACAACATTCTAGTTCTGTTTCAGTCTCAATGTGTGCACAACTTTACATTGTCTTGTTAGGGATACTTTTCTTGTTTTAA 693 0.4242 MKQGRTSSGPIFSCLLLFFCLSGSAQAYKNYTVGDSLGWFDNTEKSSVNYQKWADSKEFSLGDFLVFNTDTNHSVVQTYNVTTYKLCDYDDAQDKDTTQWSASDPSNTQTHPVTVAVPLVKEGMTYFFSGDYDGDQCKSGQHFKINVTHGQGLPKSLRTSPEDAPSPASPVAGDDDSAPDTIVPSNFSHPKEESDDEDDKASDNKQHSSSVSVSMCAQLYIVLLGILFLF 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01800 230 MobiDBLite consensus disorder prediction 151 208 - -
Cca05g01800 230 PANTHER BLUE COPPER PROTEIN 11 177 IPR039391 GO:0009055
Cca05g01800 230 MobiDBLite consensus disorder prediction 189 205 - -
Cca05g01800 230 Gene3D - 27 150 IPR008972 -
Cca05g01800 230 ProSiteProfiles Phytocyanin domain profile. 29 149 IPR003245 GO:0009055
Cca05g01800 230 PANTHER BNAA08G26900D PROTEIN 11 177 - -
Cca05g01800 230 CDD Phytocyanin 29 147 - -
Cca05g01800 230 Pfam Plastocyanin-like domain 39 141 IPR003245 GO:0009055
Cca05g01800 230 SUPERFAMILY Cupredoxins 29 147 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01800 Cca-Chr5 37664461 37667479 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01800 11 200 Phytocyanin Superfamily AT1G08500 64.767 2.01e-85 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01800 - - ccaj:109789262 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01800 05 37664461 37667479 Cca05g01800 05 37664461 37667479 ECH