Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01799 ATGGCTTCTAGAGCTGTTCCTGCGCAGGGACAACCCACCAATGGTGAAAACAAGCAAAAGAATGTGGGAGCTGAAGGGAGAAACAGAAGGGTGCTTCAGGATATTGGGAATCTTGTGACTAAACAAGCAGATCCTGGTGTCAATGTGACTAAGCGTGTCACAAGGAACTTTCGTGCTCAATTGTTGGCGAATGCACAAAAAGCTGCGGCAGAGAAGAACAAGAAGCCATACACTGGAGTAGAGAATGGCGCAGTGGTAGCAAATGGAAACTTTATTGCTGCAAGGAAGGTGGAACCTTCTAAGAAGGCAAAAGAAGAACCTGAAGTAATCATCATTAGCTCTGATGATGAATCAGAAGAAGAGATGGAGAGCCCAGCTGTTAAGGGAAGAAAGGCAAGGGATATGTCTGCCAGGAAAAATGGAAAGGCCTTCAGTTCAGCCCTCTCAGCTAGAAGCCAGGCTGCTTGTGGAGTCCCAAGGGATTCAGTAGTGAACATAGATGAAACGGACAAGGACAATGAATTGGCAGCAGCGGAATACATTGATGATATGTACATGTTTTTCAAAGAAACTGAAGAAGATGGTCGTGTGCATGATTACATGGCTTCACAGCCAGATATAAATTCCAAGATGAGATCAATCCTTGTGGATTGGTTGATAGAAGTGCATAGGAAATTTGAGCTCTCTCCGGAAACTCTCTATCTGACTCTGAACATTGTCGATCGATTCTTGTCCGTGAAGGCTGTGCCTAGAAGGGAACTTCAGTTGGTTGGTATCAGTTCAATGCTGATAGCCTCAAAATATGAAGAGATATGGGCACCGGAGGTTAATGACTTTGTATGCATATCAGACAATGCTTATGTTAGCGAACAAGTGCTGATGATGGAGAAAATGATCCTGAGAAAGCTTGAATGGTATTTGACTGTCCCCACACCCTATGTCTTCTTGGTTCGGTATATCAAAGCCTCCATTCCATTTGAGAAAGAGATGGAAAACATGGTGTTTTTCCTTGCCGAGCTCGCTTTGATGCACTATCCTACTGTAATCCTGTATTGCCCTTCTCTGATTGCCGCTTCTGCTGTATACGCCGCTCGATGTACTCTTGGAAAGAGTCCTTTCTGGACAAGGACTTTGAAGCATTACACAGGCTACTCTGAGGAGCAACTAAGGGATTGTGCCAAAATCATGGTCAACCTTCATTCTGATGCACCAGAAAGTAAGCTTAGGGCAGTTTACAAGAAATTCTGTAGCTCAGATCGCAGTGCTGTTGCTCTTCTAACTCCAGCAAAGAACTTGTCAGCACCACTGTCTTGA 1314 0.4444 MASRAVPAQGQPTNGENKQKNVGAEGRNRRVLQDIGNLVTKQADPGVNVTKRVTRNFRAQLLANAQKAAAEKNKKPYTGVENGAVVANGNFIAARKVEPSKKAKEEPEVIIISSDDESEEEMESPAVKGRKARDMSARKNGKAFSSALSARSQAACGVPRDSVVNIDETDKDNELAAAEYIDDMYMFFKETEEDGRVHDYMASQPDINSKMRSILVDWLIEVHRKFELSPETLYLTLNIVDRFLSVKAVPRRELQLVGISSMLIASKYEEIWAPEVNDFVCISDNAYVSEQVLMMEKMILRKLEWYLTVPTPYVFLVRYIKASIPFEKEMENMVFFLAELALMHYPTVILYCPSLIAASAVYAARCTLGKSPFWTRTLKHYTGYSEEQLRDCAKIMVNLHSDAPESKLRAVYKKFCSSDRSAVALLTPAKNLSAPLS 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01799 437 PIRSF Cyclin_A_B_D_E 1 437 IPR039361 -
Cca05g01799 437 CDD CYCLIN 308 397 IPR013763 -
Cca05g01799 437 MobiDBLite consensus disorder prediction 1 30 - -
Cca05g01799 437 CDD CYCLIN 211 300 IPR013763 -
Cca05g01799 437 SMART cyclin_7 217 301 IPR013763 -
Cca05g01799 437 SMART cyclin_7 314 398 IPR013763 -
Cca05g01799 437 Gene3D - 183 424 - -
Cca05g01799 437 SUPERFAMILY Cyclin-like 172 307 IPR036915 -
Cca05g01799 437 SMART Cyclin_C_2 310 429 IPR004367 -
Cca05g01799 437 Pfam Cyclin, N-terminal domain 183 307 IPR006671 -
Cca05g01799 437 Gene3D - 197 308 - -
Cca05g01799 437 SUPERFAMILY Cyclin-like 311 431 IPR036915 -
Cca05g01799 437 PANTHER CYCLINS 21 431 IPR039361 -
Cca05g01799 437 MobiDBLite consensus disorder prediction 1 21 - -
Cca05g01799 437 MobiDBLite consensus disorder prediction 114 135 - -
Cca05g01799 437 Pfam Cyclin, C-terminal domain 310 428 IPR004367 -
Cca05g01799 437 PANTHER CYCLIN-B1-4 21 431 - -
Cca05g01799 437 ProSitePatterns Cyclins signature. 212 243 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01799 Cca-Chr5 37645789 37648605 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01799 15 433 Core Cell Cycle Gene Families AT2G26760 51.429 8.74e-144 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01799 K21777 - gmx:547782 648.277