Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01791 ATGAGGAAGAAGCTCGATACTCGTTTCCCTGCTGCTAGGATTAAGAAAATCATGCAAGCTGATGAGGATGTAGGGAAGATTGCAATGGCTGTTCCTCTTCTAGTTTCTAAAGCATTAGAGCTATTTCTGCAAGATTTGTGTGATCGAACATACGAGATAACTTTGAGGAGGGGCGCAAAAACTATGAATGCTTTTCATTTAAAACAGTGCGTGCAGACTTTTAATGTCTTTGATTTTCTGAAAGATATTGTCAGCAAGGTTCCTGATTTAGGTGGTTCTGTTGCAACTGGTGATGACCATACTGTCACTAAGAGGAGGAAAGTtgctgaagatgatgataatgatagtgatgaggagtccaagagaaataagaagCCAGAGGCtggccatagcagtggcagaggaaggggcaggggcagaggtaggggtcgtggccgtggagtTAGAACAGTAGATCAAGAGACGAGTCCACGTGCCAAGTCTGAAGATGATTCTAATGTATTGAAGCAAAATGAAAAGCACACTCAGAGCAATGAAAGCATGGAAAATGTGTCAGACCCTGAAGATGTTAAGCAGACTTCTCTAGATAGCAAACCGGCCAAAGTGTCCATTCGAAATTTTGACTTAAATATGAACCCGGATGAGAATACGGATTCATCAGCCTCACCAACACCTGTAGCAACTAGTTCATCTGCAAAATCAATGTCAGAAGAGAAGCATGATGAATACCCTGGATGGTCCTGGTCTGATATGGAAAAAATGTCCATTGATCCCACGCAACTAGCCAACATAAATAGAAGGATCGATGAAGACGAAGAAGATTATGATGAAGAAATGTAG 840 0.3536 MRKKLDTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLRRGAKTMNAFHLKQCVQTFNVFDFLKDIVSKVPDLGGSVATGDDHTVTKRRKVAEDDDNDSDEESKRNKKPEAGHSSGRGRGRGRGRGRGRGVRTVDQETSPRAKSEDDSNVLKQNEKHTQSNESMENVSDPEDVKQTSLDSKPAKVSIRNFDLNMNPDENTDSSASPTPVATSSSAKSMSEEKHDEYPGWSWSDMEKMSIDPTQLANINRRIDEDEEDYDEEM 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01791 279 MobiDBLite consensus disorder prediction 145 170 - -
Cca05g01791 279 MobiDBLite consensus disorder prediction 99 134 - -
Cca05g01791 279 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Cca05g01791 279 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 278 - -
Cca05g01791 279 MobiDBLite consensus disorder prediction 209 233 - -
Cca05g01791 279 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Cca05g01791 279 MobiDBLite consensus disorder prediction 90 279 - -
Cca05g01791 279 PANTHER HISTONE SUPERFAMILY PROTEIN 1 278 - -
Cca05g01791 279 SUPERFAMILY Histone-fold 4 88 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01791 Cca-Chr5 37562484 37566264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01791 1 268 CCAAT-HAP5 Transcription Factor Family AT3G12480 45.704 3.84e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Cca05g01791 CBFD_NFYB_HMF 2.2e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01791 K21752 - gmx:100814800 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01791 05 37562484 37566264 Cca05g01791 05 37562484 37566264 ECH