Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01788 ATGGCTATCACCTTCTCAGATCTACACACCGAAAAGGGCATCAAATCCCTCGATCAATTCCTTTCTGGCAAAACCTACATTTCTGGGGACCAATTGACAAAGGATGATGTCAATGTGTATGCAGCTGTTGTGGAAAAGCCAGGTGACTCTTTTCCCAATGCTGCCAAGTGGTACCATGCTGTCACTTCCCGTCTTGCTCCAAGCTTCCCTGGGAATGCTCAAGGGGTAAGATTCGGTGGTAAGGCTGAAGCTGCACCTGCCAAAGCGGCTGCTACtgctgatgatgatgatgatcttgatCTCTTTGGTGACGAAACAGAGGAGGATAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGTCTACCAAGAAAAAAGAAAGTGGCAAGTCTTCCGTCCTGCTTGATGTCAAGCCTTGGGATGACGAAACTGACATGAAGAAGCTGGAAGAGGCTGTCCGCAGTGTTGAGATGCCTGGTTTATTGTGGGGAGCATGCAAACTGGTTCCAGTGGGTTATGGGATCAAGAAATTGCAGATCATGATGACCATTGTTGATGACCTTGTATCTGTGGACACCCTCATTGAGGAACGCCTCACAGTGGAGCCATGCAACGAGTACATCCAAAGCTGTGACATTGTTGCATTCAACAAAATTTAA 660 0.4591 MAITFSDLHTEKGIKSLDQFLSGKTYISGDQLTKDDVNVYAAVVEKPGDSFPNAAKWYHAVTSRLAPSFPGNAQGVRFGGKAEAAPAKAAATADDDDDLDLFGDETEEDKKAAEEREAAKKSTKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVEMPGLLWGACKLVPVGYGIKKLQIMMTIVDDLVSVDTLIEERLTVEPCNEYIQSCDIVAFNKI 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01788 219 CDD EF1B 128 219 IPR014038 GO:0003746|GO:0006414
Cca05g01788 219 Pfam EF-1 guanine nucleotide exchange domain 132 219 IPR014038 GO:0003746|GO:0006414
Cca05g01788 219 SUPERFAMILY GST C-terminal domain-like 10 64 IPR036282 -
Cca05g01788 219 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 219 - -
Cca05g01788 219 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 208 219 IPR001326 GO:0003746|GO:0005853|GO:0006414
Cca05g01788 219 Gene3D - 6 70 - -
Cca05g01788 219 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 95 103 IPR001326 GO:0003746|GO:0005853|GO:0006414
Cca05g01788 219 SUPERFAMILY eEF-1beta-like 127 219 IPR036219 -
Cca05g01788 219 SMART EF1_GNE_2 130 219 IPR014038 GO:0003746|GO:0006414
Cca05g01788 219 Gene3D - 123 219 IPR014717 -
Cca05g01788 219 PANTHER ELONGATION FACTOR 1-BETA 2 1 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01788 Cca-Chr5 37529382 37533188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01788 1 219 Eukaryotic Initiation Factors Gene Family AT5G12110 74.561 2.66e-106 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01788 K03232 - gmx:100816855 332.028