Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01786 ATGTCACTGTCTCCGTTACGTGAAGATGGTGATAAACCAAAGGATGACAACAATGAAGAGCGACATGAGAACATTAACACACCAACACACGAGTGTGAGATTTGTGGCAAGAAGTTTAGTTCTGGAAAAGCATTAGGTGGCCACAAAAGATCTCATCTCCAGGCTCAAAGGAAAGAGAAAGGGGCTAATAATTTGATGCTTAGTGTTGTCACCACTTGTGACAAATTCATTTGCTGCATTTGCAAGAAGGATTTTCCATCCAAAAAGTCCTTATATGGACACATGAGATCTCATTCTGCTGCGAATCGGAAGGGTATTCACCCTTCTACGTCTATGGAAGAGAACAAGAGTTATGATCATCTCAATGTTGGTGTTGCACCAGATGAAGAGCCAAAACCAAAACGTTTGAAAATGCAACCAATATTGCATAGAACCACTGATAAAGATGAGGAGATAGTTTATGGTGAAGAGGAAATTATAGCTGCTCAAATACTTGTGTCCATGAGTCATGACACGTGGCCATGTGATGTTCCATTCCCACGTATTAAGAACAATGAGAAAGGAGTTTCGAATAGTGTGGTCGTCGAAGATATTCCTAGTACTAGTGGGGTGAAAGTTCAAGTTAGTCAGCCAAAAGTGAGGAGGCTGATAGTGAAATTGAAAAATCCATATATTTAA 678 0.4012 MSLSPLREDGDKPKDDNNEERHENINTPTHECEICGKKFSSGKALGGHKRSHLQAQRKEKGANNLMLSVVTTCDKFICCICKKDFPSKKSLYGHMRSHSAANRKGIHPSTSMEENKSYDHLNVGVAPDEEPKPKRLKMQPILHRTTDKDEEIVYGEEEIIAAQILVSMSHDTWPCDVPFPRIKNNEKGVSNSVVVEDIPSTSGVKVQVSQPKVRRLIVKLKNPYI 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01786 225 MobiDBLite consensus disorder prediction 7 25 - -
Cca05g01786 225 SUPERFAMILY beta-beta-alpha zinc fingers 30 98 IPR036236 -
Cca05g01786 225 MobiDBLite consensus disorder prediction 1 25 - -
Cca05g01786 225 Pfam C2H2-type zinc finger 76 100 - -
Cca05g01786 225 Pfam C2H2-type zinc finger 30 54 - -
Cca05g01786 225 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Cca05g01786 225 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 9 116 - -
Cca05g01786 225 Gene3D Classic Zinc Finger 27 98 - -
Cca05g01786 225 SMART c2h2final6 76 98 IPR013087 -
Cca05g01786 225 SMART c2h2final6 30 52 IPR013087 -
Cca05g01786 225 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Cca05g01786 225 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 9 116 IPR044653 GO:0003700
Cca05g01786 225 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Cca05g01786 225 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01786 Cca-Chr5 37513747 37514424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01786 30 118 C2H2 Transcription Factor Family AT2G26940 35.897 6.95e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca05g01786 zf-C2H2_6 1.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01786 - - aprc:113874531 129.028