Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01785 ATGTGCTCATTATCACATGGGGAAAGTAGTGATCATGAACAAAATAAATATTTAAAGAAAGGGCCATGGACTTCGGAAGAAGATGCAATCTTAGCAGAATATGTGACAAAAAATGGAATAGGGAATTGGAATGTTGTGAGACAGCGTACTGGATTAGCTCGTTGTGGAAAAAGCTGTCGTTTAAGGTGGACAAACCATCTAAGACCAGATTTGAAGAAAGGTGTATTTAGTCCCGAAGAACAAAACAAAATCATTGAACTTCATGCTTTAATGGGAAATAAATGGGCCAAGATGGCACAAGAGTTGCCAGGTAGAACAGACAACGAAATAAAGAACTTCTGGAACACAAGACTAAAGAAAAGGAAACGAGCTGGCTTACCCCTCTACCCTGACGACATAAAGCCAGTGTTGAATAGTAACAACCCACAAAGCAGTGCTCTAAATGTTTCTATTCAGCGTGCTAATGATTCAGAAGCAGGCACATCATCAAGTGTACCAGAATTGGTGTTCAACAATTATAATCCCAACAGTGAAAACCATCCATTGTATGTGCAACCAGTTTCTGACATACCCCAAAACAGCACCTTTGAACAACAAGATTTGGACAACCAAGTCATGCCTCTCCCAGAGCAGCAGCATGACCCAGATAACCTTCACACTAGTTTGGAAAGTACTTGTGTAAATATTACTTTACCATCAACAATTGATTATGATCAGTTGCAGGGTGATTACAAATCTGGGGGCTTTGCATGTTCAAGTGGTCCTTCCTCAATATCAGAACTGCCTCCATTCCCACCATTTGATGATAATGATATTCTGAGACAGCATCCTCCAACTGAAACGCTACACTCTGAACCATTAGTTTCCAGATCTCCACGGAGCAATGGGTATTTGGAAGTCATACCAAAGATTTTGGAAAGATCAGATCATAGTTCCATGCAAGGGGAGTTAAATTCAGAAAACCAAGAAAACTTAGAGCAGGAAGATCTTGCAAATCAAGATGTTTTCTATGACTTTAGTTGCCCTACCAGTATCACTGCTGTTATCCCTACCACCATAACTGATGATAATGGTGATAATAGAGACAATGCTAATAATGGTTATAATGATAATAACAATAGTGATGATACAGATAACACTAGAGGTGACAATAATAGTGGTGATGACGTTAATGATAGTAATAACAACAATGACAATGATAATGATATACAATACAACAACAATAGCGATGATAATCATGGTAGCGACAACAACGATTCTGGAGACGATGATGGTACAAGTAGAAGAACCTTTTTTGAACAATTTCAGATGTTCATTCTCAAGGTTCATAGACGCCCTTTAGTTGTCTCACGCAAAGAAATAGTTTTGTTTGAAACATTAGAGATAACTTTAGATGTTGAATCGCCAGATTCTTCTCTTGATTCTTTAAGTTCCATTAGATCAAATTCATTGCCTTTTGCAAAGCTTGAATTGCAACATCATAAAGTTTTCTTGACCGAAGCTCTTTAA 1509 0.3797 MCSLSHGESSDHEQNKYLKKGPWTSEEDAILAEYVTKNGIGNWNVVRQRTGLARCGKSCRLRWTNHLRPDLKKGVFSPEEQNKIIELHALMGNKWAKMAQELPGRTDNEIKNFWNTRLKKRKRAGLPLYPDDIKPVLNSNNPQSSALNVSIQRANDSEAGTSSSVPELVFNNYNPNSENHPLYVQPVSDIPQNSTFEQQDLDNQVMPLPEQQHDPDNLHTSLESTCVNITLPSTIDYDQLQGDYKSGGFACSSGPSSISELPPFPPFDDNDILRQHPPTETLHSEPLVSRSPRSNGYLEVIPKILERSDHSSMQGELNSENQENLEQEDLANQDVFYDFSCPTSITAVIPTTITDDNGDNRDNANNGYNDNNNSDDTDNTRGDNNSGDDVNDSNNNNDNDNDIQYNNNSDDNHGSDNNDSGDDDGTSRRTFFEQFQMFILKVHRRPLVVSRKEIVLFETLEITLDVESPDSSLDSLSSIRSNSLPFAKLELQHHKVFLTEAL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01785 502 MobiDBLite consensus disorder prediction 351 427 - -
Cca05g01785 502 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 7 419 - -
Cca05g01785 502 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Cca05g01785 502 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Cca05g01785 502 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Cca05g01785 502 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Cca05g01785 502 Gene3D - 75 121 - -
Cca05g01785 502 CDD SANT 22 67 IPR001005 -
Cca05g01785 502 MobiDBLite consensus disorder prediction 351 414 - -
Cca05g01785 502 Gene3D - 19 72 - -
Cca05g01785 502 CDD SANT 76 118 IPR001005 -
Cca05g01785 502 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Cca05g01785 502 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Cca05g01785 502 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Cca05g01785 502 SMART sant 19 69 IPR001005 -
Cca05g01785 502 SMART sant 72 120 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01785 Cca-Chr5 37506716 37512394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01785 18 134 MYB Transcription Factor Family AT2G32460 71.795 1.09e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca05g01785 Myb_DNA-binding 9.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01785 K09422 - ccaj:109791291 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01785 05 37506716 37512394 Cca05g01785 05 37506716 37512394 ECH