Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01780 ATGACTATCGAAGCCCTAGGGCAGGTGAACGTTACTGAATCCCCCACTGCGGGATCCAGAAGTGTCGATTGCTTCGAGAAATTGGAGCAAATTGGCGAGGGCACATATGGTCAGGTTTACATGGCTAAAGAGATCGAAACTGGTGAAGTTGTTGCTCTCAAGAAAATACGAATGGACAATGAGAGAGAAGGGTTTCCTATAACTGCTATACGAGAAATCAAGATTCTAAAGAAACTACACCATGAAAATGTGATCAAGCTGAAAGAAATTGTGACTTCTGATGGTCCCGAGAAAGATGAACAAGGGAGACCTGATGGTAACAAATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGATCATGATTTAACAGGTCTTGCTGACCGACCTGGGATGAGATTTACAGTTCCTCAAATTAAGTGTTACATGAGACAGCTTTTGACGGGGCTTCACTATTGTCATGTTAATCAAGTACTTCATCGTGATATCAAAGGCTCAAATCTTCTTATAGACAATGAAGGAAATGTTAAGCTTGCAGATTTTGGACTGGCACGATCATTTTCTAATGACCAAAATGCAAATCTTACTAATCGTGTCATTACATTATGGTACAGACCACCTGAGTTGCTGCTAGGGACAACAAAGTATGGGCCAGCTGTAGATATGTGGTCTGTTGGGTGCATTTTTGCTGAGCTTCTTCAAGGGAAGCCGATCTTTCCTGGAAAAGATGAGCCAGAACAATTAAATAAAATATATGAGCTGTGTGGAGCACCAGATGAGGTCAATTGGCCTGGAGTTTCTAAGATACCTTATTATAATAAATTTAAGCCAACAAGGCAGATGAAAAGACGTTTGAGGGAAGTTTTTAGGCATTTTGATCGTCATGCTCTAGAGTTGTTGGAGAAGATGTTAACACTTGATCCGGCTCAGAGAATTACTGCAAAAGATGCACTTGATGCCGAATACTTCTGGACAGATCCATTACCATGTGATCCCAAGAGTTTACCCAAATACGAGTCATCACATGAGTTTCAGACAAAGAAAAAACGTCAACAAAGGCAAAATGAAGAAATGGCTAAACGTCAGAAAATGCAGCACCCTCGTCTTCCTCCCATTCAACAGCCTGGGCAACATGCCCAAATGCGATCCGGACCAAATCAAACAATTCACTCTCAACCCCAAGTTGCTGCAGGACCTACTCATCATTATGGAAAGCCTCGAGGTCCATCAGGTGGACCAGGAAGATATCCCCCAAGTGGGAACCCAGGTGGAGGATATAATCATCCAAATAGAGGAGGTCAAGGTGGTGGTGGTTATGGCAGTGGACCTTATCCTCCTCAAGGACGCGGTGCACCTTATGGGTCCAATAATATGTCTGGTGGTGGTCCTCGTGGCAGTGGCAGCAGTGGTGGCGGCTATGGAGTTGGAGCTCCAAATTATCCCCAACAAGGTGGCCCGTATGGGGGTTCAACGGCTGGTCGTGGCTCAAACATGATGGGTGGAAACCGCAATCAACAACAGTATGGATGGCAACAGTAA 1542 0.4403 MTIEALGQVNVTESPTAGSRSVDCFEKLEQIGEGTYGQVYMAKEIETGEVVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSDGPEKDEQGRPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNVKLADFGLARSFSNDQNANLTNRVITLWYRPPELLLGTTKYGPAVDMWSVGCIFAELLQGKPIFPGKDEPEQLNKIYELCGAPDEVNWPGVSKIPYYNKFKPTRQMKRRLREVFRHFDRHALELLEKMLTLDPAQRITAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQRQNEEMAKRQKMQHPRLPPIQQPGQHAQMRSGPNQTIHSQPQVAAGPTHHYGKPRGPSGGPGRYPPSGNPGGGYNHPNRGGQGGGGYGSGPYPPQGRGAPYGSNNMSGGGPRGSGSSGGGYGVGAPNYPQQGGPYGGSTAGRGSNMMGGNRNQQQYGWQQ 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01780 513 MobiDBLite consensus disorder prediction 485 513 - -
Cca05g01780 513 SUPERFAMILY Protein kinase-like (PK-like) 20 332 IPR011009 -
Cca05g01780 513 MobiDBLite consensus disorder prediction 335 513 - -
Cca05g01780 513 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Cca05g01780 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Cca05g01780 513 CDD STKc_CDK9_like 25 324 - -
Cca05g01780 513 ProSiteProfiles Protein kinase domain profile. 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01780 513 PANTHER CYCLIN-DEPENDENT KINASE C-2 5 447 - -
Cca05g01780 513 Gene3D Transferase(Phosphotransferase) domain 1 122 364 - -
Cca05g01780 513 PANTHER CELL DIVISION PROTEIN KINASE 5 447 - -
Cca05g01780 513 SMART serkin_6 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01780 513 MobiDBLite consensus disorder prediction 337 365 - -
Cca05g01780 513 MobiDBLite consensus disorder prediction 377 396 - -
Cca05g01780 513 Pfam Protein kinase domain 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01780 513 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01780 Cca-Chr5 37447044 37451561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01780 1 513 Core Cell Cycle Gene Families AT5G10270 75.810 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Cca05g01780 Pkinase 1.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01780 K08819 - gmx:100795971 855.129