Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01779 ATGGGAAATTCTTGCAGAAAACCAGTGGCTCATGTGTCTTCCACAAGTTTCTTTGGAAGCACAAAGTCTCAAAGTAAGAAAAAACAGAACTCAAATTCTCCTGAACAAAAATTTTCTTTAAAAACTTCTTCAGCATCAATTGTTGACAAACCCATCTCCAACAACCTTAAGATCTTCACCTTCAATGATCTAAAAGAGGCAACTAAGAACTTCAGGCAAGAAAACTTAATTGGAGAAGGAGGGTTTGGGTTTGTCTACAAGGGATGGATAGATGAGATCACCTATGCTCCCACAAGACCAGGGACTGGAATTGTAGTGGCCATAAAGAAACTTAAACCAGAAGGCTTTCAAGGCCACAGGGAATGGCTGGCAGAAGTCAATTATCTAAGCCAGCTTCACCATGAAAATCTGGTGAAACTTATTGGTTACTGCTCAGATGGTAAAAACAGGCTTCTAGTTTATGAGTTTATGCAGAAAGGAAGTTTGGAAAATCATTTATTTAGAAAAGGTGTTCAACCTATTCCCTGGATTACTCGGATCAATATTGCAGTTGCTGTTGCAAGAGGATTAACTTTTTTACACACTCTTGATGCAAATGTTATATATCGTGACTTAAAGGCTTCCAATATCCTACTTGATTCGGATTTCAATGCAAAACTTTCGGACTTTGGCTTGGCAAGAGATGGTCCTACTGGAGATAACACTCATGTTTCAACCAGAGTTATTGGAACTCATGGTTATGCTGCACCAGAGTATGTAGCTACAGGTCATTTGACACCTAGGAGTGATGTTTACAGCTTTGGAGTTGTGCTGCTAGAGCTACTAACAGGAAGGCGCGTAGTTGAGGATGAGAGACCTGGATTTTCAGAAGAAACACTTGTAGATTGGGCAAGGCCATTCTTGAGTGATAGCAGAAGAATTTTGAGAATCATGGACACGAGGTTGGGTGGTCAGTACTCCAAGAAAGGAGCACAAGCTTCAGCAGCACTTGCACTACAGTGTCTAAACACTGATCCTAAGTATAGGCCAACCATGGTGAATGTTCTAGCAACATTGGAATCATTACATTCCTTAAATTCATTTCCAAGGACCCCAAAATCTGGAAATGATAATCATACAACCAAGCATTCTAGTCACTCCAACAAGTCTGCCTCAAATAGTAACAAACTATGA 1173 0.4015 MGNSCRKPVAHVSSTSFFGSTKSQSKKKQNSNSPEQKFSLKTSSASIVDKPISNNLKIFTFNDLKEATKNFRQENLIGEGGFGFVYKGWIDEITYAPTRPGTGIVVAIKKLKPEGFQGHREWLAEVNYLSQLHHENLVKLIGYCSDGKNRLLVYEFMQKGSLENHLFRKGVQPIPWITRINIAVAVARGLTFLHTLDANVIYRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTHGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRVVEDERPGFSEETLVDWARPFLSDSRRILRIMDTRLGGQYSKKGAQASAALALQCLNTDPKYRPTMVNVLATLESLHSLNSFPRTPKSGNDNHTTKHSSHSNKSASNSNKL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01779 390 SUPERFAMILY Protein kinase-like (PK-like) 47 353 IPR011009 -
Cca05g01779 390 ProSiteProfiles Protein kinase domain profile. 71 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01779 390 MobiDBLite consensus disorder prediction 359 390 - -
Cca05g01779 390 MobiDBLite consensus disorder prediction 8 39 - -
Cca05g01779 390 ProSitePatterns Protein kinases ATP-binding region signature. 77 110 IPR017441 GO:0005524
Cca05g01779 390 Pfam Protein kinase domain 72 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01779 390 Gene3D Transferase(Phosphotransferase) domain 1 157 378 - -
Cca05g01779 390 PANTHER OS01G0588500 PROTEIN-RELATED 17 379 - -
Cca05g01779 390 SMART serkin_6 71 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01779 390 PANTHER TYROSINE KINASE FAMILY PROTEIN 17 379 - -
Cca05g01779 390 Gene3D Phosphorylase Kinase; domain 1 46 156 - -
Cca05g01779 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Cca05g01779 390 CDD STKc_IRAK 77 355 - -
Cca05g01779 390 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01779 Cca-Chr5 37441495 37445680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01779 49 352 Glycoside Hydrolase AT3G07070 53.074 1.96e-107 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca05g01779 Pkinase 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01779 - - gmx:102664409 642.884