Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01778 ATGAGTCATCCTAAGATTAAGCGCCGAGTTGGTAAATATGAGGTAGGGAGGACCATTGGTGAGGGTACATTTGCAAAGGTGAAATTTGCAAAGAACTCTGAGACTCAACAGcatgtggctcttaaaattcttgacaaggagaaggtgctcaggcacaagatggctgaacagATCAGGAGAGAAGTAGCTACAATGAAATTAATCAAGCATCCAAATGTTGTTCAATTGTATGAGGTAATGGGAAGCAAGACAAAAATATATATTGTTTTGGAGTTTGTGACTGGGGGAGAGCTCTTTGACAAAATTGTAAACCATGGACGAATGAGTGAAAATGAAGCACGTAGATATTTCCAGCAGCTTATAAATGCTGTTGACTATTGCCATAGCAGGGGTGTCTACCACAGAGACCTGAAGCCAGAAAATTTGCTGTTAGATGAGAAAGGGAACCTTAAAGTTTCTGATTTTGGTTTGAGTGCCCTCTCCCAGCAAGTTAGGGATGATGGACTTCTCCATACTACATGTGGCACTCCAAATTATGTTGCTCCTGAGGTCCTCAACGATAGAGGCTACGATGGTGCAACTGCAGACTTGTGGTCATGTGGGGTGATTCTCTTTGTATTGGTTGCAGGTTACTTGCCTTTTGATGACCCTAATCTTATGAATCTCTATAAAAAGATCTCAGCTGCTGAATTTACTTGCCCCCCGTGGCTTTCTTTCAGTGCCAGGAAATTGATTACACGAATCTTGGATCCTGATCCTATAACTCGTATCACTATACCTGAGATATTGGATGATGAATGGTTTAAGAAAGATTATAAGCCTCCAGTTTTTGAGGAGACTGGGGAAACCAACCTCGACGATGTTGAAGCTGTTTTCAAAGATTCTGAAGAGCACCATGTGACAGAGAAGAAAGAAGAGCAGCCTACGCCTACGGCCATGAATGCTTTTGAGTTAATTTCCATGTCCAAAGGGCTGAACCTTGAAAACTTGTTTGATATAGAGCAGGGATTCAAAAGGGAAACGAGATTCACATCAAAATCACCTGCAAATGAGATAATCAACAAGATTGAGGAAGCTGCAAAACCTCTTGGCTTTGATGTGCAGAAGAAAAATTACAAGATGAGGCTTGCAAATGTGAAAGCTGGAAGGAAGGGAAACCTTAGTGTTGCCACAGAGATATTTCAAGTGGCACCTTCTCTTCACATGGTTGAAGTACGGAAAGCAAAAGGAGATACATTGGAGTTCCATAAGTTCTACAAAACACTTTCAACAAGCCTGGATGATGTTGTTTGGAAAACAGAAGATGATATGCAAATGCGAGAAACAAAGTGA 1332 0.3926 MSHPKIKRRVGKYEVGRTIGEGTFAKVKFAKNSETQQHVALKILDKEKVLRHKMAEQIRREVATMKLIKHPNVVQLYEVMGSKTKIYIVLEFVTGGELFDKIVNHGRMSENEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDEKGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLVAGYLPFDDPNLMNLYKKISAAEFTCPPWLSFSARKLITRILDPDPITRITIPEILDDEWFKKDYKPPVFEETGETNLDDVEAVFKDSEEHHVTEKKEEQPTPTAMNAFELISMSKGLNLENLFDIEQGFKRETRFTSKSPANEIINKIEEAAKPLGFDVQKKNYKMRLANVKAGRKGNLSVATEIFQVAPSLHMVEVRKAKGDTLEFHKFYKTLSTSLDDVVWKTEDDMQMRETK 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01778 443 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Cca05g01778 443 Gene3D Kinase associated domain 1, KA1 308 432 - -
Cca05g01778 443 ProSiteProfiles NAF domain profile. 308 332 IPR018451 GO:0007165
Cca05g01778 443 Pfam Protein kinase domain 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01778 443 SUPERFAMILY Protein kinase-like (PK-like) 9 289 IPR011009 -
Cca05g01778 443 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 3 434 - -
Cca05g01778 443 Gene3D Phosphorylase Kinase; domain 1 3 92 - -
Cca05g01778 443 CDD CIPK_C 314 423 - -
Cca05g01778 443 SMART serkin_6 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01778 443 Pfam NAF domain 310 369 IPR004041 GO:0007165
Cca05g01778 443 CDD STKc_SnRK3 12 267 - -
Cca05g01778 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Cca05g01778 443 ProSiteProfiles Protein kinase domain profile. 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01778 443 PANTHER - 3 434 - -
Cca05g01778 443 Gene3D Transferase(Phosphotransferase) domain 1 93 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01778 Cca-Chr5 37407991 37415621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01778 5 413 CBL-interacting serine-threonine protein kinases AT2G26980 79.951 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Cca05g01778 Pkinase 8.3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01778 - - gmx:100794566 846.654